CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra028640
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra028640
T292641_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac103
M07243_2.00
Arabidopsis thaliana
TDVCTTGNDNHNCAAGTTWYY
RRWAACTTGNDNHNCAAGBHA
Dap-seq
OMalley et al.(2016)
ANAC103_col_a
0.912
0.735
anac103
M07244_2.00
Arabidopsis thaliana
TTGNDNHNCAAGYTWY
RWARCTTGNDNHNCAA
Dap-seq
OMalley et al.(2016)
ANAC103_colamp_a
0.912
0.735
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra028640.1-P
NAC/NAM
7
133
APGFRFHPTDIELVRYYLKRKVLGKKLLVDAIPEVDIYKFEPSDLPDKSFIKSGDLKWHFFCPREKKYSTGVRANRATACGFWKTTGKERDVLCNGEVAGKIKTLVYHFGKSPRGERTDWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy