CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0010s23630
(
Populus trichocarpa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
POPTR_0010s23630
T295293_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ANAC050
M07200_2.00
Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG
Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a
0.940
0.868
ANAC050
M07201_2.00
Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG
Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a
0.940
0.868
NAC078
M02372_2.00
Arabidopsis thaliana
NNRCAMGHMANN
NNTKDCKTGYNN
PBM
Weirauch et al.(2014)
pTH7209
0.874
0.789
NAC078
M07226_2.00
Arabidopsis thaliana
TTDCTTGNDNNDCAAG
CTTGHNNHNCAAGHAA
Dap-seq
OMalley et al.(2016)
NAC2_colamp_a
0.874
0.789
NAC078
M07227_2.00
Arabidopsis thaliana
DTTWCTTGNNNNRCAAG
CTTGYNNNNCAAGWAAH
Dap-seq
OMalley et al.(2016)
NAC2_col_v3a
0.874
0.789
NAC078
M11083_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC078_Q2
0.874
0.789
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0010s23630.1
NAC/NAM
40
166
APGFRFHPTDEELVIYYLKRKVSNKPFRFNAISEVDIYKNEPWDLADKSRLKSRDQEWYFFSPLDKKYGNGARMNRATGKGYWKATGKDREIRRECQLLAMKKTLVFHSGRAPGGLRTNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Populus trichocarpa
TFs
91 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy