CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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e_gw1.164.26.1
(
Physcomitrella patens
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
e_gw1.164.26.1
T297032_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.987
0.763
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.987
0.763
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.987
0.763
NAC48
M11084_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.984
0.754
AT3G12910
M07204_2.00
Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR
Dap-seq
OMalley et al.(2016)
AT3G12910_col_a
0.943
0.553
NAC101
M07241_2.00
Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA
Dap-seq
OMalley et al.(2016)
VND6_colamp_a
0.892
0.596
NAC101
M07242_2.00
Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA
Dap-seq
OMalley et al.(2016)
VND6_col_v31
0.892
0.596
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.164.26.1
NAC/NAM
14
140
PPGFRFHPTDEELVLHYLRRKANSGVFQIPVIAEVDLYKFDPWDLPNKALFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIHMSKGHSKVGVKKALVFYRGKAPKGEKTNWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Physcomitrella patens
TFs
552 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ADAC006089
Anopheles darlingi
ADAC006089
N
0.000
ASIS008522
Anopheles sinensis
ASIS008522
N
0.000
AQUA007639
Anopheles quadriannulatus
AQUA007639
N
0.000
AMIN011389
Anopheles minimus
AMIN011389
N
0.000
AMEC000015
Anopheles melas
AMEC000015
N
0.000
AFUN003720
Anopheles funestus
AFUN003720
N
0.000
AFAF016275
Anopheles farauti
AFAF016275
N
0.000
AEPI001428
Anopheles epiroticus
AEPI001428
N
0.000
ADIR008796
Anopheles dirus
ADIR008796
N
0.000
ACUA008783
Anopheles culicifacies
ACUA008783
N
0.000
ACOM039160
Anopheles coluzzii
ACOM039160
N
0.000
ACHR004176
Anopheles christyi
ACHR004176
N
0.000
AATE007835
Anopheles atroparvus
AATE007835
N
0.000
AARA002353
Anopheles arabiensis
AARA002353
N
0.000
AALB006067
Anopheles albimanus
AALB006067
N
0.000
AGAP005446
Anopheles gambiae
AGAP005446
N
0.000
ASTEI02067
Anopheles stephensi
ASTEI02067
N
0.000