Pavir.J04559 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.J04559 T298933_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC073
M07221_2.00
Arabidopsis thaliana
CTTSWNNNWYAMGYH

DRCKTRWNNNWSAAG
Dap-seq
OMalley et al.(2016)
SND2_col_a
0.971 0.860
NAC073
M07222_2.00
Arabidopsis thaliana
CKTSWNNNWYACGYW

WRCGTRWNNNWSAMG
Dap-seq
OMalley et al.(2016)
SND2_colamp_a
0.971 0.860
PK27085.1
M01293_2.00
Cannabis sativa
AATTTATT

AATAAATT
PBM
Lambert et al.(2019)
pTH11262
0.952 0.746
anac075
M07223_2.00
Arabidopsis thaliana
CTTSWNNNWYAMGYT

ARCKTRWNNNWSAAG
Dap-seq
OMalley et al.(2016)
ANAC075_col_a
0.951 0.746
NAC010
M07167_2.00
Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH

DRWDDCKTRWNNNWSAAGNWWN
Dap-seq
OMalley et al.(2016)
SND3_colamp_a
0.944 0.746
NAC010
M07168_2.00
Arabidopsis thaliana
CKTSWNNNWYAMGYW

WRCKTRWNNNWSAMG
Dap-seq
OMalley et al.(2016)
SND3_col_b
0.944 0.746
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J04559.1.p NAC/NAM 63 217
Pavir.J04559.2.p NAC/NAM 63 206

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYB92 Arabidopsis thaliana AT5G10280 D 0.000
cassava44907.m1 Manihot esculenta cassava44907.m1 I 0.000
cassava44382.m1 Manihot esculenta cassava44382.m1 I 0.000
cassava17115.m1 Manihot esculenta cassava17115.m1 I 0.000
Pm023191 Prunus mume Pm023191 I 0.000
Pm019588 Prunus mume Pm019588 I 0.000
VIT_16s0039g01710 Vitis vinifera VIT_16s0039g01710 I 0.000
TRIUR3_23397 Triticum urartu TRIUR3_23397 I 0.000
TRIUR3_03772 Triticum urartu TRIUR3_03772 I 0.000
TRIUR3_03304 Triticum urartu TRIUR3_03304 I 0.000
Traes_7AS_B8E8A2F55 Triticum aestivum Traes_7AS_B8E8A2F55 I 0.000
Traes_6DL_8BF29D46C Triticum aestivum Traes_6DL_8BF29D46C I 0.000
Traes_6DL_499F64524 Triticum aestivum Traes_6DL_499F64524 I 0.000
Traes_6BL_5A2DB8F78 Triticum aestivum Traes_6BL_5A2DB8F78 I 0.000
Traes_6BL_0D6CD031E Triticum aestivum Traes_6BL_0D6CD031E I 0.000
Traes_6AL_52227091B Triticum aestivum Traes_6AL_52227091B I 0.000
Traes_6AL_2BA02CAA9 Triticum aestivum Traes_6AL_2BA02CAA9 I 0.000
TCM_034902 Theobroma cacao TCM_034902 I 0.000
cassava4659.m1 Manihot esculenta cassava4659.m1 I 0.000
Cucsa.338590 Cucumis sativus Cucsa.338590 I 0.000
Bostr.13175s0070 Boechera stricta Bostr.13175s0070 I 0.000
Thhalv10014028m.g Eutrema salsugineum Thhalv10014028m.g I 0.000
Thhalv10004620m.g Eutrema salsugineum Thhalv10004620m.g I 0.000
Pavir.Da02398 Panicum virgatum Pavir.Da02398 I 0.000
orange1.1g039198m.g Citrus sinensis orange1.1g039198m.g I 0.000
MDP0000286526 Malus domestica MDP0000286526 I 0.000
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I 0.000
Gorai.009G236900 Gossypium raimondii Gorai.009G236900 I 0.000
Gorai.008G179600 Gossypium raimondii Gorai.008G179600 I 0.000
gene12564-v1.0-hybrid Fragaria vesca gene12564-v1.0-hybrid I 0.000
gene02214-v1.0-hybrid Fragaria vesca gene02214-v1.0-hybrid I 0.000
Eucgr.K00077 Eucalyptus grandis Eucgr.K00077 I 0.000
Eucgr.F00325 Eucalyptus grandis Eucgr.F00325 I 0.000
Ciclev10020765m.g Citrus clementina Ciclev10020765m.g I 0.000
Carubv10026822m.g Capsella rubella Carubv10026822m.g I 0.000
Carubv10003148m.g Capsella rubella Carubv10003148m.g I 0.000
Cagra.1085s0031 Capsella grandiflora Cagra.1085s0031 I 0.000
Cagra.0917s0061 Capsella grandiflora Cagra.0917s0061 I 0.000
Si017785m.g Setaria italica Si017785m.g I 0.000
Si014103m.g Setaria italica Si014103m.g I 0.000
OB03G29100 Oryza brachyantha OB03G29100 I 0.000
MLOC_52134 Hordeum vulgare MLOC_52134 I 0.000
MLOC_51960 Hordeum vulgare MLOC_51960 I 0.000
LPERR03G17070 Leersia perrieri LPERR03G17070 I 0.000
GSMUA_Achr9G24560_001 Musa acuminata GSMUA_Achr9G24560_001 I 0.000
GSMUA_Achr3G06470_001 Musa acuminata GSMUA_Achr3G06470_001 I 0.000
GRMZM2G110135 Zea mays GRMZM2G110135 I 0.000
GRMZM2G017268 Zea mays GRMZM2G017268 I 0.000
GLYMA01G02070 Glycine max GLYMA01G02070 I 0.000
MYB92 Arabidopsis lyrata fgenesh2_kg.6__990__AT5G10280.1 I 0.000
F775_26732 Aegilops tauschii F775_26732 I 0.000
BRADI3G58770 Brachypodium distachyon BRADI3G58770 I 0.000
Bra028593 Brassica rapa Bra028593 I 0.000
Bra006055 Brassica rapa Bra006055 I 0.000
Bo9g172290 Brassica oleracea Bo9g172290 I 0.000
Bo3g005530 Brassica oleracea Bo3g005530 I 0.000
Bo2g009800 Brassica oleracea Bo2g009800 I 0.000
OBART02G32900 Oryza barthii OBART02G32900 I 0.000
OGLUM02G33500 Oryza glumaepatula OGLUM02G33500 I 0.000
Sb07g028990 Sorghum bicolor Sb07g028990 I 0.000
PRUPE_ppa019280mg Prunus persica PRUPE_ppa019280mg I 0.000
PRUPE_ppa017039mg Prunus persica PRUPE_ppa017039mg I 0.000
POPTR_0019s07760 Populus trichocarpa POPTR_0019s07760 I 0.000
POPTR_0007s05360 Populus trichocarpa POPTR_0007s05360 I 0.000
OS03G0388600 Oryza sativa OS03G0388600 I 0.000
ORUFI03G20530 Oryza rufipogon ORUFI03G20530 I 0.000
ORUFI02G34560 Oryza rufipogon ORUFI02G34560 I 0.000
ORGLA03G0186000 Oryza glaberrima ORGLA03G0186000 I 0.000
ORGLA02G0284500 Oryza glaberrima ORGLA02G0284500 I 0.000
OPUNC06G07380 Oryza punctata OPUNC06G07380 I 0.000
OPUNC03G18740 Oryza punctata OPUNC03G18740 I 0.000
OPUNC02G30360 Oryza punctata OPUNC02G30360 I 0.000
ONIVA03G21580 Oryza nivara ONIVA03G21580 I 0.000
ONIVA02G35050 Oryza nivara ONIVA02G35050 I 0.000
OMERI03G17860 Oryza meridionalis OMERI03G17860 I 0.000
OMERI02G31500 Oryza meridionalis OMERI02G31500 I 0.000
BGIOSGA010612 Oryza indica BGIOSGA010612 I 0.000