CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10010340m.g
(
Eutrema salsugineum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Thhalv10010340m.g
T299231_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC062
M00977_2.00
Arabidopsis thaliana
NTTMCTTAV
BTAAGKAAN
PBM
Lindemose et al.(2014)
NTL6
0.930
0.921
NAC062
M07212_2.00
Arabidopsis thaliana
CTTMNHNNBYAAGNWWHN
NDWWNCTTRVNNDNKAAG
Dap-seq
OMalley et al.(2016)
ANAC062_colamp_a
0.930
0.921
NAC062
M07213_2.00
Arabidopsis thaliana
TNCTTMDBNNBYAAG
CTTRVNNVHKAAGNA
Dap-seq
OMalley et al.(2016)
ANAC062_col
0.930
0.921
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10010340m
NAC/NAM
14
141
PVGLRFRPTDQELVRFYLRRKINGHDNDVKAIREIDICKWEPWDLPDFSVIKTKDSEWLFFCPLDRKYPNGSRQNRATIAGYWKATGKDRKIRSDKDNIIGVKRTLVFHSGRAPKGTRTNWIIHEYRA
Links
Other
NAC/NAM
family TFs
Other
Eutrema salsugineum
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy