CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CGI_10011713
(
Crassostrea gigas
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CGI_10011713
T301903_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EKC18621
Nuclear receptor
65
134
IPCKVCGDKSSGVHYGIITCEGCKGFFRRSQAGPVNYQCPRNKNCVIDRVNRNRCQFCRLQKCLALGMSR
EKC18621
Nuclear receptor
261
330
IPCKVCGDKSSGVHYGIITCEGCKGFFRRSQAGPVNYQCPRNKNCVIDRVNRNRCQFCRLQKCLALGMSR
Links
Other
Nuclear receptor
family TFs
Other
Crassostrea gigas
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh2_pg.scaffold_333000035
Branchiostoma floridae
fgenesh2_pg.scaffold_333000035
N
0.890
fgenesh2_pg.scaffold_292000021
Branchiostoma floridae
fgenesh2_pg.scaffold_292000021
N
0.876
Ogr13888
Ophisaurus gracilis
Ogr13888
N
0.829
nr1h4
Xenopus tropicalis
XB-GENE-487942
N
0.787
ENSAMXG00000005494
Astyanax mexicanus
ENSAMXG00000005494
N
0.778