CRE00427 (Caenorhabditis remanei)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CRE00427 T302036_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GA30480
M02409_2.00
Drosophila pseudoobscura
RAGATCAM

KTGATCTY
PBM
Weirauch et al.(2014)
pTH5877
0.980 0.900
Hr51
M06432_2.00
Drosophila melanogaster
AMRDATCARARGW

WCYTYTGATHYKT
B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012
0.980 0.886
NR2E3
M00373_2.00
Homo sapiens
NRAGATCAMN

NKTGATCTYN
PBM
Barrera et al.(2016)
NR2E3_REF
0.968 0.843
Nr2e3
M02708_2.00
Mus musculus
AAGCTTD

HAAGCTT
SELEX
Mathelier et al.(2014)
MA0164.1
0.968 0.843
Nr2e3
M09328_2.00
Mus musculus
NAAGTCAAAARKCA

TGMYTTTTGACTTN
Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C
0.968 0.843
NR2E3
M00372_2.00
Homo sapiens
AAAGATCA

TGATCTTT
PBM
Barrera et al.(2016)
NR2E3_R77Q
0.968 0.829
NR2E3
M00370_2.00
Homo sapiens
NNNWRABATCANN

NNTGATVTYWNNN
PBM
Barrera et al.(2016)
NR2E3_R76Q
0.963 0.829
NR2E3
M00371_2.00
Homo sapiens
NNNHAATWTRTNN

NNAYAWATTDNNN
PBM
Barrera et al.(2016)
NR2E3_R76W
0.957 0.829
NR2E3
M00369_2.00
Homo sapiens
NGGGRTCAHN

NDTGAYCCCN
PBM
Barrera et al.(2016)
NR2E3_G56R
0.950 0.829
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE00427 Nuclear receptor 100 170

Links

Other Nuclear receptor family TFs
Other Caenorhabditis remanei TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g01891 Acanthocheilonema viteae nAv.1.0.1.g01891 I 0.986
ACYPI007601 Acyrthosiphon pisum ACYPI007601 I 0.980
AAEL007190 Aedes aegypti AAEL007190 I 0.981
ENSAMEG00000008835 Ailuropoda melanoleuca ENSAMEG00000008835 I 0.928
Alligator_sinensis_CCG020979.1 Alligator sinensis Alligator_sinensis_CCG020979.1 I 0.980
ANCCAN_05510 Ancylostoma caninum ANCCAN_05510 I 0.987
ANCCEY_01724 Ancylostoma ceylanicum ANCCEY_01724 I 0.987
NR2E3 Anolis carolinensis ENSACAG00000011910 I 0.980
AALB001133 Anopheles albimanus AALB001133 I 0.980
AARA003887 Anopheles arabiensis AARA003887 I 0.980
AATE003142 Anopheles atroparvus AATE003142 I 0.980
ACOM026748 Anopheles coluzzii ACOM026748 I 0.980
ADAC006988 Anopheles darlingi ADAC006988 I 0.980
AEPI011067 Anopheles epiroticus AEPI011067 I 0.980
AFAF011447 Anopheles farauti AFAF011447 I 0.980
AMEM000983 Anopheles merus AMEM000983 I 0.980
GB49738 Apis mellifera GB49738 I 0.980
Afo_R007066 Aptenodytes forsteri Afo_R007066 I 0.978
ASU_07884 Ascaris suum ASU_07884 I 0.987
ENSAMXG00000017872 Astyanax mexicanus ENSAMXG00000017872 I 0.980
BGLB004019 Biomphalaria glabrata BGLB004019 I 0.978
ENSBTAP00000048604-D1 Bos grunniens ENSBTAP00000048604-D1 I 0.968
NR2E3 Bos taurus ENSBTAG00000014236 I 0.968
e_gw.107.44.1 Branchiostoma floridae e_gw.107.44.1 I 0.980
e_gw.324.28.1 Branchiostoma floridae e_gw.324.28.1 I 0.980
Bm4485 Brugia malayi Bm4485 I 0.987
BTMF_0001091401 Brugia timori BTMF_0001091401 I 0.987
BXY_0327700 Bursaphelenchus xylophilus BXY_0327700 I 0.987
CBN22518 Caenorhabditis brenneri CBN22518 I 0.987
CBG14155 Caenorhabditis briggsae CBG14155 I 0.987
fax-1 Caenorhabditis elegans WBGene00001400 I 0.987
CJA07370 Caenorhabditis japonica CJA07370 I 0.987
NR2E3 Callithrix jacchus ENSCJAG00000018552 I 0.968
Aan_R004022 Calypte anna Aan_R004022 I 0.978
CapteG171557 Capitella teleta CapteG171557 I 0.976
NR2E3 Cavia porcellus ENSCPOG00000008974 I 0.968
Cmyd_10012017 Chelonia mydas Cmyd_10012017 I 0.980
ENSCSAG00000013721 Chlorocebus sabaeus ENSCSAG00000013721 I 0.968
csin100859 Clonorchis sinensis csin100859 I 0.985
CGI_10007932 Crassostrea gigas CGI_10007932 I 0.980
CGOC_0000187501 Cylicostephanus goldi CGOC_0000187501 I 0.987
nr2e3 Danio rerio ENSDARG00000045904 I 0.980
DAPPUDRAFT_106791 Daphnia pulex DAPPUDRAFT_106791 I 0.975
DICVIV_11193 Dictyocaulus viviparus DICVIV_11193 I 0.987
nDi.2.2.2.g10236 Dirofilaria immitis nDi.2.2.2.g10236 I 0.986
GF13031 Drosophila ananassae FBgn0090064 I 0.980
GH20426 Drosophila grimshawi FBgn0127889 I 0.980
Hr51 Drosophila melanogaster FBgn0034012 D 0.980
GI19610 Drosophila mojavensis FBgn0142347 I 0.980
GL17752 Drosophila persimilis FBgn0155355 I 0.980
GA30480 Drosophila pseudoobscura FBgn0264774 D 0.980
GD11109 Drosophila simulans FBgn0182865 I 0.980
GJ14974 Drosophila virilis FBgn0202177 I 0.980
GK20892 Drosophila willistoni FBgn0222886 I 0.980
GE13645 Drosophila yakuba FBgn0231304 I 0.980
ECPE_0000243601 Echinostoma caproni ECPE_0000243601 I 0.987
EVEC_0000564801 Enterobius vermicularis EVEC_0000564801 I 0.981
NR2E3 Equus caballus ENSECAG00000015192 I 0.968
NR2E3 Felis catus ENSFCAG00000031082 I 0.968
ENSFALG00000009699 Ficedula albicollis ENSFALG00000009699 I 0.978
ENSGMOG00000008342 Gadus morhua ENSGMOG00000008342 I 0.962
ENSGMOG00000019194 Gadus morhua ENSGMOG00000019194 I 0.980
NR2E3 Gallus gallus ENSGALG00000002093 I 0.978
nr2e3 Gasterosteus aculeatus ENSGACG00000004739 I 0.965
NR2E3 Gasterosteus aculeatus ENSGACG00000017060 I 0.980
Gfo_R008863 Geospiza fortis Gfo_R008863 I 0.978
GPLIN_000669800 Globodera pallida GPLIN_000669800 I 0.986
NR2E3 Gorilla gorilla ENSGGOG00000004383 I 0.968
HCOI01781300 Haemonchus contortus HCOI01781300 I 0.987
HHAL007294-PA Halyomorpha halys HHAL007294-PA I 0.747
Hsal_07902--XP_396999.3_APIME Harpegnathos saltator Hsal_07902--XP_396999.3_APIME I 0.980
HelroG139475 Helobdella robusta HelroG139475 I 0.979
Hba_15323 Heterorhabditis bacteriophora Hba_15323 I 0.987
NR2E3 Homo sapiens ENSG00000278570 D 0.968
ENSSTOG00000012080 Ictidomys tridecemlineatus ENSSTOG00000012080 I 0.968
ISCW019467 Ixodes scapularis ISCW019467 I 0.805
ENSLACG00000022378 Latimeria chalumnae ENSLACG00000022378 I 0.980
ENSLOCG00000014973 Lepisosteus oculatus ENSLOCG00000014973 I 0.980
LDEC022044 Leptinotarsa decemlineata LDEC022044 I 0.980
nLs.2.1.2.g01701 Litomosoides sigmodontis nLs.2.1.2.g01701 I 0.987
LOAG_06205 Loa loa LOAG_06205 I 0.987
LotgiG137595 Lottia gigantea LotgiG137595 I 0.980
NR2E3 Macaca mulatta ENSMMUG00000019276 I 0.968
ENSMEUG00000016597 Macropus eugenii ENSMEUG00000016597 I 0.973
NR2E3 Meleagris gallopavo ENSMGAG00000001449 I 0.769
snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 I 0.930
genemark-nMf.1.1.scaf00188-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00188-processed-gene-0.4 I 0.986
MhA1_Contig1792.frz3.gene6 Meloidogyne hapla MhA1_Contig1792.frz3.gene6 I 0.986
NR2E3 Monodelphis domestica ENSMODG00000001949 I 0.973
MDOA010244 Musca domestica MDOA010244 I 0.980
ENSMPUG00000017103 Mustela putorius furo ENSMPUG00000017103 I 0.968
Nr2e3 Mus musculus ENSMUSG00000032292 D 0.968
Myotis_brandtii_NR2E3_10027281 Myotis brandtii Myotis_brandtii_NR2E3_10027281 I 0.968
NR2E3 Myotis lucifugus ENSMLUG00000008408 I 0.968
NV14480 Nasonia vitripennis NV14480 I 0.980
NEMVEDRAFT_v1g169225 Nematostella vectensis NEMVEDRAFT_v1g169225 I 0.816
ENSNLEG00000013807 Nomascus leucogenys ENSNLEG00000013807 I 0.968
NR2E3 Ochotona princeps ENSOPRG00000006427 I 0.968
OESDEN_00114 Oesophagostomum dentatum OESDEN_00114 I 0.880
OFLC_0000991001 Onchocerca flexuosa OFLC_0000991001 I 0.987
nOo.2.0.1.g11611 Onchocerca ochengi nOo.2.0.1.g11611 I 0.987
nOo.2.0.1.g10097 Onchocerca ochengi nOo.2.0.1.g10097 I 0.987
nOo.2.0.1.g01040 Onchocerca ochengi nOo.2.0.1.g01040 I 0.987
WBGene00240517 Onchocerca volvulus WBGene00240517 I 0.987
Ogr12843 Ophisaurus gracilis Ogr12843 I 0.980
ENSONIG00000007109 Oreochromis niloticus ENSONIG00000007109 I 0.980
ENSONIG00000015396 Oreochromis niloticus ENSONIG00000015396 I 0.967
NR2E3 Oryzias latipes ENSORLG00000000011 I 0.980
nr2e3 Oryzias latipes ENSORLG00000007175 I 0.975
NR2E3 Otolemur garnettii ENSOGAG00000006128 I 0.968
ENSOARG00000018808 Ovis aries ENSOARG00000018808 I 0.968
NR2E3 Pan troglodytes ENSPTRG00000007242 I 0.968
ENSPANG00000016257 Papio anubis ENSPANG00000016257 I 0.968
PTRK_0000446300 Parastrongyloides trichosuri PTRK_0000446300 I 0.986
PHUM039420 Pediculus humanus PHUM039420 I 0.980
PHUM331460 Pediculus humanus PHUM331460 I 0.751
ENSPMAG00000009792 Petromyzon marinus ENSPMAG00000009792 I 0.984
ENSPFOG00000006106 Poecilia formosa ENSPFOG00000006106 I 0.980
ENSPFOG00000006516 Poecilia formosa ENSPFOG00000006516 I 0.975
Pvit_13689 Pogona vitticeps Pvit_13689 I 0.980
scaffold395-EXSNAP2012.23 Pristionchus exspectatus scaffold395-EXSNAP2012.23 I 0.789
scaffold296-EXSNAP2012.8 Pristionchus exspectatus scaffold296-EXSNAP2012.8 I 0.985
Ppa-fax-1 Pristionchus pacificus PPA00264 I 0.985
Ppa-nhr-3 Pristionchus pacificus PPA28597 I 0.789
NR2E3 Procavia capensis ENSPCAG00000014733 I 0.968
NR2E3 Pteropus vampyrus ENSPVAG00000009088 I 0.968
Nr2e3 Rattus norvegicus ENSRNOG00000050690 I 0.968
RSKR_0000698500 Rhabditophanes kr3021 RSKR_0000698500 I 0.986
RPRC002557 Rhodnius prolixus RPRC002557 I 0.980
Sakowv30007027m.g Saccoglossus kowalevskii Sakowv30007027m.g I 0.985
Smp_167770 Schistosoma mansoni Smp_167770 I 0.984
SMRZ_0000841101 Schistosoma margrebowiei SMRZ_0000841101 I 0.984
SMTD_0001566201 Schistosoma mattheei SMTD_0001566201 I 0.984
SMU15029049 Schmidtea mediterranea SMU15029049 I 0.987
SMU15038222 Schmidtea mediterranea SMU15038222 I 0.987
SBAD_0000006401 Soboliphyme baturini SBAD_0000006401 I 0.985
L596_g2163 Steinernema carpocapsae L596_g2163 I 0.986
L889_g11978 Steinernema feltiae L889_g11978 I 0.986
L893_g28297 Steinernema glaseri L893_g28297 I 0.986
L898_g15355 Steinernema monticolum L898_g15355 I 0.986
L892_g9366 Steinernema scapterisci L892_g9366 I 0.986
SMAR005628 Strigamia maritima SMAR005628 I 0.926
SMAR006008 Strigamia maritima SMAR006008 I 0.767
SPU_014405 Strongylocentrotus purpuratus SPU_014405 I 0.985
SPAL_0001117000 Strongyloides papillosus SPAL_0001117000 I 0.987
SSTP_0000090600 Strongyloides stercoralis SSTP_0000090600 I 0.987
SVE_0933400 Strongyloides venezuelensis SVE_0933400 I 0.987
NR2E3 Sus scrofa ENSSSCG00000004978 I 0.966
SMUV_0000245701 Syphacia muris SMUV_0000245701 I 0.982
ENSTGUG00000004498 Taeniopygia guttata ENSTGUG00000004498 I 0.978
NR2E3 Takifugu rubripes ENSTRUG00000015582 I 0.980
TELCIR_21617 Teladorsagia circumcincta TELCIR_21617 I 0.838
tetur01g11040 Tetranychus urticae tetur01g11040 I 0.977
tetur08g01210 Tetranychus urticae tetur08g01210 I 0.748
NR2E3 Tetraodon nigroviridis ENSTNIG00000005150 I 0.952
TCLT_0000456401 Thelazia callipaeda TCLT_0000456401 I 0.986
TCNE_0001716001 Toxocara canis TCNE_0001716001 I 0.987
TC009378 Tribolium castaneum TC009378 I 0.980
D917_05007 Trichinella nativa D917_05007 I 0.979
EFV56045 Trichinella spiralis EFV56045 I 0.979
TRE_0000223201 Trichobilharzia regenti TRE_0000223201 I 0.985
D918_07443 Trichuris suis D918_07443 I 0.977
TTRE_0000600201 Trichuris trichiura TTRE_0000600201 I 0.977
NR2E3 Tupaia belangeri ENSTBEG00000011672 I 0.965
NR2E3 Tursiops truncatus ENSTTRG00000009410 I 0.968
WUBG_05086 Wuchereria bancrofti WUBG_05086 I 0.838
nr2e3 Xenopus tropicalis XB-GENE-485801 I 0.973
ENSXMAG00000015842 Xiphophorus maculatus ENSXMAG00000015842 I 0.975
ENSXMAG00000010311 Xiphophorus maculatus ENSXMAG00000010311 I 0.980
L798_02234 Zootermopsis nevadensis L798_02234 I 0.978