NR1I2 (Cavia porcellus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSCPOG00000020161 T302781_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.990 0.986
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.968 0.957
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.968 0.957
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.968 0.957
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.968 0.957
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.879 0.657
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.839 0.614
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.839 0.614
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.839 0.614
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.839 0.614
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.839 0.614
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.839 0.614
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.839 0.614
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.839 0.614
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.839 0.614
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.802 0.643
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000017618 Nuclear receptor 39 109

Links

Other Nuclear receptor family TFs
Other Cavia porcellus TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.745
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.968
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.839
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.836
ANCCAN_22289 Ancylostoma caninum ANCCAN_22289 I 0.780
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.805
VDR Anolis carolinensis ENSACAG00000013485 I 0.880
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.845
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.880
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.880
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.902
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.954
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.839
VDR Bos taurus ENSBTAG00000016414 I 0.839
NR1I2 Bos taurus ENSBTAG00000019557 I 0.951
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.968
VDR Callithrix jacchus ENSCJAG00000015018 I 0.839
Aan_R009572 Calypte anna Aan_R009572 I 0.841
VDR Canis familiaris ENSCAFG00000009103 I 0.839
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.904
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.839
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.831
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.883
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.839
ENSCSAG00000007092 Chlorocebus sabaeus ENSCSAG00000007092 I 0.801
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.839
vdr-a Ciona intestinalis ENSCING00000020740 I 0.902
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.919
CGOC_0001446101 Cylicostephanus goldi CGOC_0001446101 I 0.780
vdrb Danio rerio ENSDARG00000070721 I 0.880
nr1i2 Danio rerio ENSDARG00000029766 I 0.940
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.839
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.990
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.968
VDR Equus caballus ENSECAG00000015822 I 0.839
NR1I2 Equus caballus ENSECAG00000008728 I 0.968
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.839
NR1I2 Felis catus ENSFCAG00000006092 I 0.968
VDR Felis catus ENSFCAG00000024594 I 0.839
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.879
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.880
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.841
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.802
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.802
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.880
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.880
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.841
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.968
VDR Gorilla gorilla ENSGGOG00000016473 I 0.839
NR1I2 Homo sapiens ENSG00000144852 D 0.968
VDR Homo sapiens ENSG00000111424 D 0.839
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.990
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.839
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.937
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.876
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.880
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.910
VDR Loxodonta africana ENSLAFG00000006418 I 0.839
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.968
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.839
VDR Macaca mulatta ENSMMUG00000006727 I 0.839
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.968
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.839
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.925
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.841
VDR Microcebus murinus ENSMICG00000009017 I 0.839
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.839
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.839
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.990
Vdr Mus musculus ENSMUSG00000022479 D 0.839
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.965
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.839
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.965
VDR Myotis lucifugus ENSMLUG00000000912 I 0.839
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.839
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.968
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.987
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.798
ENSONIG00000014385 Oreochromis niloticus ENSONIG00000014385 I 0.905
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.880
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.880
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.839
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.981
nr1i2 Oryzias latipes ENSORLG00000017953 I 0.843
vdr Oryzias latipes ENSORLG00000016402 I 0.880
vdralpha Oryzias latipes ENSORLG00000001063 I 0.880
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.948
VDR Otolemur garnettii ENSOGAG00000005480 I 0.839
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.839
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.968
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.839
ENSPANG00000004760 Papio anubis ENSPANG00000004760 I 0.801
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.883
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.837
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.879
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.812
ENSPFOG00000007256 Poecilia formosa ENSPFOG00000007256 I 0.879
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.880
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.880
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.794
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.880
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.794
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.839
ENSPPYG00000013508 Pongo abelii ENSPPYG00000013508 I 0.801
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.921
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.963
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.839
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.990
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.839
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.937
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.954
VDR Sus scrofa ENSSSCG00000020864 I 0.839
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.841
vdra Takifugu rubripes ENSTRUG00000011907 I 0.880
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.880
nr1i2 Takifugu rubripes ENSTRUG00000003245 I 0.893
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.761
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.968
TELCIR_04193 Teladorsagia circumcincta TELCIR_04193 I 0.754
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.828
nr1i2 Tetraodon nigroviridis ENSTNIG00000013932 I 0.944
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.880
D917_00700 Trichinella nativa D917_00700 I 0.805
EFV58098 Trichinella spiralis EFV58098 I 0.805
TMUE_s0008014200 Trichuris muris TMUE_s0008014200 I 0.805
D918_02615 Trichuris suis D918_02615 I 0.805
VDR Tupaia belangeri ENSTBEG00000005717 I 0.839
VDR Tursiops truncatus ENSTTRG00000012578 I 0.839
vdr.S Xenopus laevis XB-GENE-864847 I 0.856
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.918
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.918
vdr Xenopus tropicalis XB-GENE-486505 I 0.852
nr1i3 Xenopus tropicalis XB-GENE-479859 I 0.941
ENSXMAG00000003990 Xiphophorus maculatus ENSXMAG00000003990 I 0.857
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.880
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.880