CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBG26996_CONSTRUCT
(
PBM CONSTRUCTS
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
CBG26996_CONSTRUCT
T306949_2.00
HughesLab (2013-Jun-13)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG26996_CONSTRUCT
M01300_2.00
PBM CONSTRUCTS
NNNNTGRWMN
NKWYCANNNN
PBM
Lambert et al.(2019)
pTH11460
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-204
M00704_2.00
Caenorhabditis elegans
NDNTGRTMHN
NDKAYCANHN
PBM
Narasimhan et al.(2015)
pTH10028
0.961
0.729
For this family, TFs with SR scores >
0.745
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01300_2.00
Nuclear receptor
45
117
SSCQVCFGKATGHHYDVASCNGCKSFFRRVTIEKLVYKCDNHMRCYNDFKAGDKIPKCRACRYKRCVDVGMNP
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG26996_CONSTRUCT
Nuclear receptor
45
117
SSCQVCFGKATGHHYDVASCNGCKSFFRRVTIEKLVYKCDNHMRCYNDFKAGDKIPKCRACRYKRCVDVGMNP
Links
Other
Nuclear receptor
family TFs
Other
PBM CONSTRUCTS
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy