CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30030751m.g
(
Saccoglossus kowalevskii
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
Sakowv30030751m.g
T307053_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NR2E1
M02394_2.00
Homo sapiens
NGAGGTCARN
NYTGACCTCN
PBM
Weirauch et al.(2014)
pTH6281
0.867
0.786
Nr2e1
M00814_2.00
Mus musculus
NNNGTYRNNN
NNNYRACNNN
PBM
Weirauch et al.(2013)
pTH2936
0.867
0.786
A1YGC6_PANPA
M02421_2.00
Pan paniscus
NNGTCANNN
NNNTGACNN
PBM
Weirauch et al.(2014)
pTH5561
0.867
0.786
NR2E1
M03364_2.00
Homo sapiens
WDAAGTCAA
TTGACTTHW
SELEX
Jolma et al.(2013)
NR2E1_1
0.867
0.786
NR2E1
M03365_2.00
Homo sapiens
RARTCAWDAAGTCA
TGACTTHWTGAYTY
SELEX
Jolma et al.(2013)
NR2E1_2
0.867
0.786
Nr2e1
M03427_2.00
Mus musculus
WDAAGTCAW
WTGACTTHW
SELEX
Jolma et al.(2013)
Nr2e1_1
0.867
0.786
Nr2e1
M03428_2.00
Mus musculus
RRGTCAWDAAGTCA
TGACTTHWTGACYY
SELEX
Jolma et al.(2013)
Nr2e1_2
0.867
0.786
NR2E1
M05585_2.00
Homo sapiens
NNAAGTCAN
NTGACTTNN
SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX
0.867
0.786
NR2E1
M05586_2.00
Homo sapiens
NDAAGTCAN
NTGACTTHN
SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX
0.867
0.786
dsf
M06431_2.00
Drosophila melanogaster
AAAAGTCANH
DNTGACTTTT
B1H
Zhu et al.(2011)
dsf_SANGER_5_FBgn0015381
0.802
0.686
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23940795_peptide
Nuclear receptor
4
73
IPCRVCGDRSSGKHYGVYSCDGCRGFFKRSVRRNLAYVCKENNNCIVDVTRRNQCQACRFKKCLEVRMNK
Links
Other
Nuclear receptor
family TFs
Other
Saccoglossus kowalevskii
TFs
248 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SMU15038277
Schmidtea mediterranea
SMU15038277
I
0.982
e_gw.333.48.1
Branchiostoma floridae
e_gw.333.48.1
I
0.981
Ocbimv22038770m.g
Octopus bimaculoides
Ocbimv22038770m.g
I
0.979
CapteG53417
Capitella teleta
CapteG53417
I
0.976
GPLIN_000097300
Globodera pallida
GPLIN_000097300
I
0.976
BGLB009763
Biomphalaria glabrata
BGLB009763
I
0.973
CGI_10027671
Crassostrea gigas
CGI_10027671
I
0.972
LotgiG120392
Lottia gigantea
LotgiG120392
I
0.972
DME_0000705401
Dracunculus medinensis
DME_0000705401
I
0.972
NEMVEDRAFT_v1g132075
Nematostella vectensis
NEMVEDRAFT_v1g132075
I
0.972
nhr-236
Caenorhabditis elegans
WBGene00021417
I
0.972
PHUM494010
Pediculus humanus
PHUM494010
I
0.971
ALUE_0000688601
Ascaris lumbricoides
ALUE_0000688601
I
0.971
TCNE_0001744001
Toxocara canis
TCNE_0001744001
I
0.971
ASU_00538
Ascaris suum
ASU_00538
I
0.971
CBN10913
Caenorhabditis brenneri
CBN10913
I
0.970
DAPPUDRAFT_116667
Daphnia pulex
DAPPUDRAFT_116667
I
0.968
NEMVEDRAFT_v1g99425
Nematostella vectensis
NEMVEDRAFT_v1g99425
I
0.968
ASTEI07503
Anopheles stephensi
ASTEI07503
I
0.966
AEPI001141
Anopheles epiroticus
AEPI001141
I
0.966
ADIR010552
Anopheles dirus
ADIR010552
I
0.966
AFAF018414
Anopheles farauti
AFAF018414
I
0.966
CpipJ_CPIJ017884
Culex pipiens
CpipJ_CPIJ017884
I
0.966
AMEC010971
Anopheles melas
AMEC010971
I
0.966
AFUN001116
Anopheles funestus
AFUN001116
I
0.966
ACUA020513
Anopheles culicifacies
ACUA020513
I
0.966
AMAM020935
Anopheles maculatus
AMAM020935
I
0.966
AMEM007574
Anopheles merus
AMEM007574
I
0.966
AMIN000538
Anopheles minimus
AMIN000538
I
0.966
PNRLIKE
Aedes aegypti
AAEL008043
I
0.966
AALB002684
Anopheles albimanus
AALB002684
I
0.966
AQUA006534
Anopheles quadriannulatus
AQUA006534
I
0.966
CPIJ017884
Culex quinquefasciatus
CPIJ017884
I
0.966
ASIS017452
Anopheles sinensis
ASIS017452
I
0.966
AATE006105
Anopheles atroparvus
AATE006105
I
0.966
AARA001809
Anopheles arabiensis
AARA001809
I
0.966
ACOM033973
Anopheles coluzzii
ACOM033973
I
0.966
AGAP001348
Anopheles gambiae
AGAP001348
I
0.966
SPU_017375
Strongylocentrotus purpuratus
SPU_017375
I
0.965
TC030676
Tribolium castaneum
TC030676
I
0.965
YQE_08225
Dendroctonus ponderosae
YQE_08225
I
0.965
LDEC002297
Leptinotarsa decemlineata
LDEC002297
I
0.965
Hba_13386
Heterorhabditis bacteriophora
Hba_13386
I
0.964
CBG16821
Caenorhabditis briggsae
CBG16821
I
0.963
BXY_0757200
Bursaphelenchus xylophilus
BXY_0757200
I
0.962
D917_07429
Trichinella nativa
D917_07429
I
0.962
EFV59394
Trichinella spiralis
EFV59394
I
0.962
PPA06908
Pristionchus pacificus
PPA06908
I
0.962
nDi.2.2.2.g01137
Dirofilaria immitis
nDi.2.2.2.g01137
I
0.962
nAv.1.0.1.g01655
Acanthocheilonema viteae
nAv.1.0.1.g01655
I
0.961
RPRC009755
Rhodnius prolixus
RPRC009755
I
0.960
BGIBMGA000670
Bombyx mori
BGIBMGA000670
I
0.959
CLEC008419
Cimex lectularius
CLEC008419
I
0.959
L798_02901
Zootermopsis nevadensis
L798_02901
I
0.959
NV17364
Nasonia vitripennis
NV17364
I
0.958
PXEA_0002767701
Protopolystoma xenopodis
PXEA_0002767701
I
0.957
KGM_02557
Danaus plexippus
KGM_02557
I
0.956
SMAR005242
Strigamia maritima
SMAR005242
I
0.954
Cflo_11610--XP_624042.1_APIME
Camponotus floridanus
Cflo_11610--XP_624042.1_APIME
I
0.952
Hsal_03554--XP_624042.1_APIME
Harpegnathos saltator
Hsal_03554--XP_624042.1_APIME
I
0.952
ISCW009256
Ixodes scapularis
ISCW009256
I
0.952
scaffold431-EXSNAP2012.16
Pristionchus exspectatus
scaffold431-EXSNAP2012.16
I
0.951
HelroG148449
Helobdella robusta
HelroG148449
I
0.951
tetur03g02550
Tetranychus urticae
tetur03g02550
I
0.950
TMUE_s0002021300
Trichuris muris
TMUE_s0002021300
I
0.947
HelroG190681
Helobdella robusta
HelroG190681
I
0.946
D918_08129
Trichuris suis
D918_08129
I
0.944
TTRE_0000264801
Trichuris trichiura
TTRE_0000264801
I
0.944
SINV14755
Solenopsis invicta
SINV14755
I
0.943
HMEL013397
Heliconius melpomene
HMEL013397
I
0.943
GB52015
Apis mellifera
GB52015
I
0.943
augustus_masked-nMf.1.1.scaf00796-processed-gene-0.1
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf00796-processed-gene-0.1
N
0.926
MhA1_Contig1097.frz3.gene5
Meloidogyne hapla
MhA1_Contig1097.frz3.gene5
N
0.918
XP_002154441.1
Hydra magnipapillata
XP_002154441.1
N
0.918
XP_002156561.1
Hydra magnipapillata
XP_002156561.1
I
0.913
Minc02801
Meloidogyne incognita
Minc02801
N
0.910
nr2e1.S
Xenopus laevis
XB-GENE-864991
I
0.869
nr2e1
Xenopus tropicalis
XB-GENE-483554
I
0.869
ENSCSAG00000015143
Chlorocebus sabaeus
ENSCSAG00000015143
I
0.867
NR2E1
Cavia porcellus
ENSCPOG00000000097
I
0.867
NR2E1
Callithrix jacchus
ENSCJAG00000005966
I
0.867
NR2E1
Dasypus novemcinctus
ENSDNOG00000015478
I
0.867
NR2E1
Erinaceus europaeus
ENSEEUG00000015193
I
0.867
NR2E1
Gallus gallus
ENSGALG00000015305
I
0.867
NR2E1
Sus scrofa
ENSSSCG00000004384
I
0.867
NR2E1
Homo sapiens
ENSG00000112333
D
0.867
Aan_R007044
Calypte anna
Aan_R007044
I
0.867
ENSFALG00000011755
Ficedula albicollis
ENSFALG00000011755
I
0.867
NR2E1
Felis catus
ENSFCAG00000002255
I
0.867
NR2E1
Equus caballus
ENSECAG00000018990
I
0.867
Cmyd_10021619
Chelonia mydas
Cmyd_10021619
I
0.867
Pvit_18941
Pogona vitticeps
Pvit_18941
I
0.867
Ogr18563
Ophisaurus gracilis
Ogr18563
I
0.867
A1YGC6_PANPA
Pan paniscus
A1YGC6_PANPA
D
0.867
ENSAMEG00000008117
Ailuropoda melanoleuca
ENSAMEG00000008117
I
0.867
NR2E1
Anolis carolinensis
ENSACAG00000005957
I
0.867
ENSAPLG00000010675
Anas platyrhynchos
ENSAPLG00000010675
I
0.867
NR2E1
Bos taurus
ENSBTAG00000013991
I
0.867
NR2E1
Canis familiaris
ENSCAFG00000003761
I
0.867
NR2E1
Choloepus hoffmanni
ENSCHOG00000007344
I
0.867
ENSGGOG00000027453
Gorilla gorilla
ENSGGOG00000027453
I
0.867
ENSBTAP00000018594-D1
Bos grunniens
ENSBTAP00000018594-D1
I
0.867
ENSP00000357979
Macaca fascicularis
ENSP00000357979
I
0.867
Alligator_sinensis_CCG021621.1
Alligator sinensis
Alligator_sinensis_CCG021621.1
I
0.867
ENSGGOG00000010051
Gorilla gorilla
ENSGGOG00000010051
I
0.867
ENSNLEG00000013646
Nomascus leucogenys
ENSNLEG00000013646
I
0.867
ENSOARG00000010848
Ovis aries
ENSOARG00000010848
I
0.867
Nr2e1
Rattus norvegicus
ENSRNOG00000050550
I
0.867
NR2E1
Sorex araneus
ENSSARG00000013555
I
0.867
Nr2e1
Mus musculus
ENSMUSG00000019803
D
0.867
NR2E1
Oryctolagus cuniculus
ENSOCUG00000005853
I
0.867
NR2E1
Otolemur garnettii
ENSOGAG00000011992
I
0.867
ENSPSIG00000006035
Pelodiscus sinensis
ENSPSIG00000006035
I
0.867
ENSPANG00000016092
Papio anubis
ENSPANG00000016092
I
0.867
NR2E1
Pan troglodytes
ENSPTRG00000018472
I
0.867
NR2E1
Pteropus vampyrus
ENSPVAG00000001731
I
0.867
ENSPPYG00000016893
Pongo abelii
ENSPPYG00000016893
I
0.867
NR2E1
Tursiops truncatus
ENSTTRG00000008863
I
0.867
ENSLOCG00000016602
Lepisosteus oculatus
ENSLOCG00000016602
I
0.867
NR2E1
Myotis lucifugus
ENSMLUG00000005543
I
0.867
NR2E1
Loxodonta africana
ENSLAFG00000013583
I
0.867
NR2E1
Tupaia belangeri
ENSTBEG00000011676
I
0.867
ENSSTOG00000007248
Ictidomys tridecemlineatus
ENSSTOG00000007248
I
0.867
NR2E1
Taeniopygia guttata
ENSTGUG00000012147
I
0.867
NR2E1
Macaca mulatta
ENSMMUG00000023767
I
0.867
ENSMPUG00000009805
Mustela putorius furo
ENSMPUG00000009805
I
0.867
NR2E1
Monodelphis domestica
ENSMODG00000018005
I
0.867
ENSSHAG00000017854
Sarcophilus harrisii
ENSSHAG00000017854
I
0.867
tetur01g02690
Tetranychus urticae
tetur01g02690
I
0.860
ENSXMAG00000003283
Xiphophorus maculatus
ENSXMAG00000003283
I
0.858
nr2e1
Takifugu rubripes
ENSTRUG00000001893
I
0.858
nr2e1
Tetraodon nigroviridis
ENSTNIG00000012282
I
0.858
ENSONIG00000013281
Oreochromis niloticus
ENSONIG00000013281
I
0.858
nr2e1
Gasterosteus aculeatus
ENSGACG00000008934
I
0.858
ENSPFOG00000019532
Poecilia formosa
ENSPFOG00000019532
I
0.858
ENSGMOG00000016036
Gadus morhua
ENSGMOG00000016036
I
0.858
ENSLACG00000015675
Latimeria chalumnae
ENSLACG00000015675
I
0.858
nr2e1
Oryzias latipes
ENSORLG00000013426
I
0.858
Sakowv30031927m.g
Saccoglossus kowalevskii
Sakowv30031927m.g
I
0.857
nr2e1
Danio rerio
ENSDARG00000017107
I
0.856
maker-nMf.1.1.scaf06872-augustus-gene-0.3
Meloidogyne floridensis
maker-nMf.1.1.scaf06872-augustus-gene-0.3
N
0.847
SPU_024486
Strongylocentrotus purpuratus
SPU_024486
I
0.843
NEMVEDRAFT_v1g169225
Nematostella vectensis
NEMVEDRAFT_v1g169225
I
0.841
SPU_008936
Strongylocentrotus purpuratus
SPU_008936
I
0.830
SPU_027487
Strongylocentrotus purpuratus
SPU_027487
I
0.830
Gfo_R016106
Geospiza fortis
Gfo_R016106
I
0.827
Sakowv30026672m.g
Saccoglossus kowalevskii
Sakowv30026672m.g
I
0.825
gw.353.21.1
Branchiostoma floridae
gw.353.21.1
I
0.823
e_gw.356.102.1
Branchiostoma floridae
e_gw.356.102.1
I
0.823
DAPPUDRAFT_299736
Daphnia pulex
DAPPUDRAFT_299736
I
0.822
KGM_01261
Danaus plexippus
KGM_01261
I
0.821
KGM_12726
Danaus plexippus
KGM_12726
I
0.821
MCINX005281
Melitaea cinxia
MCINX005281
I
0.821
Cflo_04264--XP_624265.2_APIME
Camponotus floridanus
Cflo_04264--XP_624265.2_APIME
I
0.813
ACEP27077
Atta cephalotes
ACEP27077
I
0.813
Hsal_12124--XP_624265.2_APIME
Harpegnathos saltator
Hsal_12124--XP_624265.2_APIME
I
0.813
TC001069
Tribolium castaneum
TC001069
I
0.811
YQE_10677
Dendroctonus ponderosae
YQE_10677
I
0.811
LDEC003555
Leptinotarsa decemlineata
LDEC003555
I
0.811
AATE017601
Anopheles atroparvus
AATE017601
I
0.810
AFAF007327
Anopheles farauti
AFAF007327
I
0.810
AFUN008855
Anopheles funestus
AFUN008855
I
0.810
ACHR006241
Anopheles christyi
ACHR006241
I
0.810
ACOM032542
Anopheles coluzzii
ACOM032542
I
0.810
ADIR011495
Anopheles dirus
ADIR011495
I
0.810
AMEC009570
Anopheles melas
AMEC009570
I
0.810
AAEL005381
Aedes aegypti
AAEL005381
I
0.810
AARA011806
Anopheles arabiensis
AARA011806
I
0.810
ASTEI03772
Anopheles stephensi
ASTEI03772
I
0.810
AGAP009575
Anopheles gambiae
AGAP009575
I
0.810
AQUA007553
Anopheles quadriannulatus
AQUA007553
I
0.810
AALB000508
Anopheles albimanus
AALB000508
I
0.810
MDOA002279
Musca domestica
MDOA002279
I
0.808
MESCA004444
Megaselia scalaris
MESCA004444
I
0.807
PHUM596250
Pediculus humanus
PHUM596250
I
0.807
HHAL003045-PA
Halyomorpha halys
HHAL003045-PA
I
0.806
ACYPI56792
Acyrthosiphon pisum
ACYPI56792
I
0.806
NEMVEDRAFT_v1g114090
Nematostella vectensis
NEMVEDRAFT_v1g114090
I
0.805
BGLB000662
Biomphalaria glabrata
BGLB000662
I
0.804
HelroG81672
Helobdella robusta
HelroG81672
I
0.803
PPAI008488
Phlebotomus papatasi
PPAI008488
I
0.802
LLOJ008560
Lutzomyia longipalpis
LLOJ008560
I
0.802
GM18579
Drosophila sechellia
FBgn0173485
I
0.802
GF15588
Drosophila ananassae
FBgn0092613
I
0.802
GA21482
Drosophila pseudoobscura
FBgn0081468
I
0.802
dsf
Drosophila melanogaster
FBgn0015381
D
0.802
GG25103
Drosophila erecta
FBgn0117232
I
0.802
GH11011
Drosophila grimshawi
FBgn0118492
I
0.802
GD23369
Drosophila simulans
FBgn0194755
I
0.802
GL19043
Drosophila persimilis
FBgn0156644
I
0.802
GI17531
Drosophila mojavensis
FBgn0140275
I
0.802
GJ15408
Drosophila virilis
FBgn0202602
I
0.802
GK14705
Drosophila willistoni
FBgn0216711
I
0.802
LCUP005636
Lucilia cuprina
LCUP005636
I
0.802
GE25723
Drosophila yakuba
FBgn0242781
I
0.802
CLEC025112
Cimex lectularius
CLEC025112
I
0.801
WUBG_07942
Wuchereria bancrofti
WUBG_07942
N
0.798
GB50458
Apis mellifera
GB50458
I
0.798
LotgiG135497
Lottia gigantea
LotgiG135497
I
0.797
HCOI00499200
Haemonchus contortus
HCOI00499200
I
0.794
NBR_0002150401
Nippostrongylus brasiliensis
NBR_0002150401
I
0.794
TELCIR_04430
Teladorsagia circumcincta
TELCIR_04430
I
0.794
HCOI00563400
Haemonchus contortus
HCOI00563400
I
0.794
HPLM_0000273901
Haemonchus placei
HPLM_0000273901
I
0.794
ACOC_0000908001
Angiostrongylus costaricensis
ACOC_0000908001
I
0.794
ANCCAN_24590
Ancylostoma caninum
ANCCAN_24590
I
0.794
ACAC_0001268701
Angiostrongylus cantonensis
ACAC_0001268701
I
0.794
SMU15015045
Schmidtea mediterranea
SMU15015045
I
0.786
nOo.2.0.1.g04609
Onchocerca ochengi
nOo.2.0.1.g04609
I
0.779
RSKR_0000792200
Rhabditophanes kr3021
RSKR_0000792200
I
0.779
nAv.1.0.1.g01027
Acanthocheilonema viteae
nAv.1.0.1.g01027
I
0.776
ALUE_0000403201
Ascaris lumbricoides
ALUE_0000403201
I
0.776
BTMF_0000437701
Brugia timori
BTMF_0000437701
I
0.776
WBGene00241769
Onchocerca volvulus
WBGene00241769
I
0.776
OFLC_0001242901
Onchocerca flexuosa
OFLC_0001242901
I
0.776
Bm12516
Brugia malayi
Bm12516
I
0.776
TCNE_0000809801
Toxocara canis
TCNE_0000809801
I
0.776
TCLT_0000820901
Thelazia callipaeda
TCLT_0000820901
I
0.776
nOo.2.0.1.g00175
Onchocerca ochengi
nOo.2.0.1.g00175
I
0.776
nDi.2.2.2.g02808
Dirofilaria immitis
nDi.2.2.2.g02808
I
0.776
WUBG_10076
Wuchereria bancrofti
WUBG_10076
I
0.776
Bm2078
Brugia malayi
Bm2078
I
0.776
ASU_07782
Ascaris suum
ASU_07782
I
0.776
EEL_0000988401
Elaeophora elaphi
EEL_0000988401
I
0.776
CapteG224811
Capitella teleta
CapteG224811
I
0.774
DME_0000202701
Dracunculus medinensis
DME_0000202701
I
0.769
SVE_0117200
Strongyloides venezuelensis
SVE_0117200
I
0.765
PTRK_0000518200
Parastrongyloides trichosuri
PTRK_0000518200
I
0.765
EVEC_0000945501
Enterobius vermicularis
EVEC_0000945501
I
0.765
SPAL_0001263800
Strongyloides papillosus
SPAL_0001263800
I
0.765
SSTP_0000630700
Strongyloides stercoralis
SSTP_0000630700
I
0.760
Sjc_0058250
Schistosoma japonicum
Sjc_0058250
I
0.758
TRE_0001126701
Trichobilharzia regenti
TRE_0001126701
I
0.758
T265_07403
Opisthorchis viverrini
T265_07403
I
0.751
csin110418
Clonorchis sinensis
csin110418
I
0.751
SNAPOd2T00007449001
Oikopleura dioica
SNAPOd2T00007449001
I
0.750
nr2f5
Takifugu rubripes
ENSTRUG00000004195
I
0.750
CBG06024
Caenorhabditis briggsae
CBG06024
I
0.750
CRE12569
Caenorhabditis remanei
CRE12569
I
0.750
D915_09414
Fasciola hepatica
D915_09414
I
0.747
A_01819
Schistosoma haematobium
A_01819
I
0.747
SMUV_0000987101
Syphacia muris
SMUV_0000987101
I
0.747
Smp_139360
Schistosoma mansoni
Smp_139360
I
0.747
SMRZ_0001531701
Schistosoma margrebowiei
SMRZ_0001531701
I
0.747
Minc11620
Meloidogyne incognita
Minc11620
I
0.746
genemark-nMf.1.1.scaf00299-processed-gene-0.6
Meloidogyne floridensis
genemark-nMf.1.1.scaf00299-processed-gene-0.6
I
0.746
Minc12751
Meloidogyne incognita
Minc12751
I
0.746
Minc12749
Meloidogyne incognita
Minc12749
I
0.746