CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L898_g30036
(
Steinernema monticolum
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
L898_g30036
T309484_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-46
M00692_2.00
Caenorhabditis elegans
NNNDWNHRN
NYDNWHNNN
PBM
Narasimhan et al.(2015)
pTH9924
0.918
0.714
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L898_g30036.t1
Nuclear receptor
82
152
VACVGCGSTTSIRVHYGAASCHGCKAFFRRSVFDGRNYRCHAKGNCDINNESRNRCRACRFRKCTLGGMNP
L898_g30036.t2
Nuclear receptor
82
152
VACVGCGSTTSIRVHYGAASCHGCKAFFRRSVFDGRNYRCHAKGNCDINNESRNRCRACRFRKCTLGGMNP
Links
Other
Nuclear receptor
family TFs
Other
Steinernema monticolum
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy