CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-nMf.1.1.scaf03338-augustus-gene-0.3
(
Meloidogyne floridensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
maker-nMf.1.1.scaf03338-augustus-gene-0.3
T309565_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
maker-nMf.1.1.scaf03338-augustus-gene-0.3-mRNA-1
Nuclear receptor
12
86
QKCEVCSDLATGLHYRAITCEGCKGFFRRFYQKEPRFVCKNQLPNQQCPCPISKSTRNACQKCRLEKCLQVGMDP
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne floridensis
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
maker-nMf.1.1.scaf00849-augustus-gene-0.9
Meloidogyne floridensis
maker-nMf.1.1.scaf00849-augustus-gene-0.9
N
0.956
Minc14819
Meloidogyne incognita
Minc14819
N
0.956
Minc16037
Meloidogyne incognita
Minc16037
N
0.956
NBR_0000650501
Nippostrongylus brasiliensis
NBR_0000650501
I
0.824
HPLM_0002138101
Haemonchus placei
HPLM_0002138101
I
0.773
nRc.2.0.1.g44932
Romanomermis culicivorax
nRc.2.0.1.g44932
I
0.773
HCOI00493700
Haemonchus contortus
HCOI00493700
I
0.773
HCOI00086900
Haemonchus contortus
HCOI00086900
I
0.773
TMUE_s0249000200
Trichuris muris
TMUE_s0249000200
I
0.771
D918_01741
Trichuris suis
D918_01741
I
0.771
TTRE_0000267601
Trichuris trichiura
TTRE_0000267601
I
0.771
EVEC_0001151201
Enterobius vermicularis
EVEC_0001151201
I
0.758
DICVIV_04175
Dictyocaulus viviparus
DICVIV_04175
I
0.746