nRc.2.0.1.g43935 (Romanomermis culicivorax)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 nRc.2.0.1.g43935 T309896_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
kni
M06557_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Mathelier et al.(2014)
MA0451.1 		0.892 0.643
kni
M06419_2.00 		Drosophila melanogaster
RAWNKVGNWC
GWNCBMNWTY		 B1H
Zhu et al.(2011)
kni_FlyReg_FBgn0001320 		0.892 0.643
kni
M06420_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Zhu et al.(2011)
kni_NAR_FBgn0001320 		0.892 0.643
kni
M06421_2.00 		Drosophila melanogaster
RWAANTRGRNCA
TGNYCYANTTWY		 B1H
Zhu et al.(2011)
kni_SANGER_5_FBgn0001320 		0.892 0.643
kni
M08225_2.00 		Drosophila melanogaster
YAGNGYTGYC
GRCARCNCTR		 ChIP-seq
Contrino et al.(2012)
Mf24 		0.892 0.643
kni
M09687_2.00 		Drosophila melanogaster
NAAWNKRGADCAV
BTGHTCYMNWTTN		 Misc
Kulakovskiy et al.(2009)
kni 		0.892 0.643
kni
M11189_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$KNI_Q6 		0.892 0.643
knrl
M03930_2.00 		Drosophila melanogaster
AWNTRGRKCAN
NTGMYCYANWT		 SELEX
Nitta et al.(2015)
knrl_1 		0.890 0.657
knrl
M03931_2.00 		Drosophila melanogaster
AWBBGTAACR
YGTTACVVWT		 SELEX
Nitta et al.(2015)
knrl_2 		0.890 0.657
knrl
M06422_2.00 		Drosophila melanogaster
AAABTRGRKCA
TGMYCYAVTTT		 B1H
Zhu et al.(2011)
knrl_SANGER_5_FBgn0001323 		0.890 0.657
eg
M03927_2.00 		Drosophila melanogaster
NAAAYTRGAKCA
TGMTCYARTTTN		 SELEX
Nitta et al.(2015)
eg_1 		0.880 0.686
eg
M06415_2.00 		Drosophila melanogaster
RAAANTAGRGCAV
BTGCYCTANTTTY		 B1H
Zhu et al.(2011)
eg_SANGER_5_FBgn0000560 		0.880 0.686
AGAP010438
M02389_2.00 		Anopheles gambiae
NRGDKCRNN
NNYGMHCYN		 PBM
Weirauch et al.(2014)
pTH6429 		0.879 0.629
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t43935-RA Nuclear receptor 14 83

Links

Other Nuclear receptor family TFs
Other Romanomermis culicivorax TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
kni Drosophila sechellia FBgn0044208 I 0.892
GA18381 Drosophila pseudoobscura FBgn0078384 I 0.892
GL12762 Drosophila persimilis FBgn0150368 I 0.892
GG13292 Drosophila erecta FBgn0105564 I 0.892
kni Drosophila melanogaster FBgn0001320 D 0.892
kni Drosophila simulans FBgn0044187 I 0.892
GK10545 Drosophila willistoni FBgn0212560 I 0.892
kni Drosophila virilis FBgn0013118 I 0.892
GF24121 Drosophila ananassae FBgn0101115 I 0.892
GE22389 Drosophila yakuba FBgn0239612 I 0.892
GH16981 Drosophila grimshawi FBgn0124452 I 0.892
GI11896 Drosophila mojavensis FBgn0134654 I 0.892
GH16982 Drosophila grimshawi FBgn0124453 I 0.890
GG13294 Drosophila erecta FBgn0105566 I 0.890
GI11900 Drosophila mojavensis FBgn0134658 I 0.890
LCUP004920 Lucilia cuprina LCUP004920 I 0.890
MDOA012160 Musca domestica MDOA012160 I 0.890
GK10566 Drosophila willistoni FBgn0212581 I 0.890
GJ13774 Drosophila virilis FBgn0200993 I 0.890
GD12173 Drosophila simulans FBgn0183909 I 0.890
GM22199 Drosophila sechellia FBgn0177069 I 0.890
GE22392 Drosophila yakuba FBgn0239615 I 0.890
GF24122 Drosophila ananassae FBgn0101116 I 0.890
knrl Drosophila melanogaster FBgn0001323 D 0.890
DAPPUDRAFT_290668 Daphnia pulex DAPPUDRAFT_290668 I 0.888
Hsal_02927--XP_395932.2_APIME Harpegnathos saltator Hsal_02927--XP_395932.2_APIME I 0.887
Cflo_03607--XP_395932.2_APIME Camponotus floridanus Cflo_03607--XP_395932.2_APIME I 0.887
GA18413 Drosophila pseudoobscura FBgn0078415 I 0.885
LCUP004919 Lucilia cuprina LCUP004919 I 0.882
MDOA002495 Musca domestica MDOA002495 I 0.882
SINV19531 Solenopsis invicta SINV19531 I 0.881
GF25170 Drosophila ananassae FBgn0102162 I 0.880
GE19793 Drosophila yakuba FBgn0237126 I 0.880
GK17344 Drosophila willistoni FBgn0219343 I 0.880
GD15001 Drosophila simulans FBgn0186673 I 0.880
GL24862 Drosophila persimilis FBgn0162450 I 0.880
GI11566 Drosophila mojavensis FBgn0134326 I 0.880
GA20312 Drosophila pseudoobscura FBgn0080307 I 0.880
GG16225 Drosophila erecta FBgn0108460 I 0.880
eg Drosophila melanogaster FBgn0000560 D 0.880
GE23274 Drosophila yakuba FBgn0240471 I 0.880
GL12764 Drosophila persimilis FBgn0150370 I 0.880
GH16373 Drosophila grimshawi FBgn0123844 I 0.880
AATE013762 Anopheles atroparvus AATE013762 I 0.879
ADIR005732 Anopheles dirus ADIR005732 I 0.879
AARA005929 Anopheles arabiensis AARA005929 I 0.879
ACUA011505 Anopheles culicifacies ACUA011505 I 0.879
LCUP004922 Lucilia cuprina LCUP004922 I 0.879
ACEP13260 Atta cephalotes ACEP13260 I 0.879
AEPI004043 Anopheles epiroticus AEPI004043 I 0.879
LDEC003050 Leptinotarsa decemlineata LDEC003050 I 0.879
AALB007603 Anopheles albimanus AALB007603 I 0.879
TC003413 Tribolium castaneum TC003413 I 0.879
AAEL011231 Aedes aegypti AAEL011231 I 0.879
ASIS019127 Anopheles sinensis ASIS019127 I 0.879
AQUA005997 Anopheles quadriannulatus AQUA005997 I 0.879
AGAP010438 Anopheles gambiae AGAP010438 D 0.879
MDOA008593 Musca domestica MDOA008593 I 0.879
PPAI002202 Phlebotomus papatasi PPAI002202 I 0.879
AFAF014433 Anopheles farauti AFAF014433 I 0.879
GB48727 Apis mellifera GB48727 I 0.879
AFUN003486 Anopheles funestus AFUN003486 I 0.879
AMIN004996 Anopheles minimus AMIN004996 I 0.879
AMEM014965 Anopheles merus AMEM014965 I 0.879
HHAL001315-PA Halyomorpha halys HHAL001315-PA I 0.878
HMEL010451 Heliconius melpomene HMEL010451 I 0.871
GJ11245 Drosophila virilis FBgn0198506 I 0.871
KGM_10290 Danaus plexippus KGM_10290 I 0.870
RPRC003216 Rhodnius prolixus RPRC003216 I 0.869
ACYPI066036 Acyrthosiphon pisum ACYPI066036 I 0.869
L798_11128 Zootermopsis nevadensis L798_11128 I 0.869
ACYPI56791 Acyrthosiphon pisum ACYPI56791 I 0.869
ACYPI48166 Acyrthosiphon pisum ACYPI48166 I 0.869
CLEC007515 Cimex lectularius CLEC007515 I 0.869
CLEC025065 Cimex lectularius CLEC025065 I 0.866
KGM_21348 Danaus plexippus KGM_21348 I 0.864
TC003409 Tribolium castaneum TC003409 I 0.864
AGAP028221 Anopheles gambiae AGAP028221 I 0.864
PHUM470190 Pediculus humanus PHUM470190 I 0.862
DAPPUDRAFT_290673 Daphnia pulex DAPPUDRAFT_290673 I 0.860
SMAR012614 Strigamia maritima SMAR012614 I 0.859
tetur34g00430 Tetranychus urticae tetur34g00430 I 0.859
Cflo_03603--XP_001120531.1_APIME Camponotus floridanus Cflo_03603--XP_001120531.1_APIME I 0.851
Hsal_02936--XP_001120531.1_APIME Harpegnathos saltator Hsal_02936--XP_001120531.1_APIME I 0.851
GB51231 Apis mellifera GB51231 I 0.851
NV16468 Nasonia vitripennis NV16468 I 0.851
SINV19432 Solenopsis invicta SINV19432 I 0.851
ACEP12797 Atta cephalotes ACEP12797 I 0.851
PHUM468660 Pediculus humanus PHUM468660 I 0.849
Hsal_02933--XP_001120662.1_APIME Harpegnathos saltator Hsal_02933--XP_001120662.1_APIME I 0.846