CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold251-EXSNAP2012.44
(
Pristionchus exspectatus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
scaffold251-EXSNAP2012.44
T310234_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.930
0.586
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.841
0.543
nhr-204
M00704_2.00
Caenorhabditis elegans
NDNTGRTMHN
NDKAYCANHN
PBM
Narasimhan et al.(2015)
pTH10028
0.765
0.443
CBG26996_CONSTRUCT
M01300_2.00
PBM CONSTRUCTS
NNNNTGRWMN
NKWYCANNNN
PBM
Lambert et al.(2019)
pTH11460
0.746
0.457
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold251-EXSNAP2012.44
Nuclear receptor
35
109
ERCLVCGDKSTGYHYGTPSCNGCKSFFRRTLVEQRRFVCESNDDCTILPKTRKEEKRRHCRACRFRKCIEVGMKP
Links
Other
Nuclear receptor
family TFs
Other
Pristionchus exspectatus
TFs
212 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy