CRE05503 (Caenorhabditis remanei)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 CRE05503 T311510_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.752 0.752
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.752 0.752
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.752 0.752
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.712 0.712
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.704 0.704
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.704 0.704
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.704 0.704
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.704 0.704
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.704 0.704
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.704 0.704
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE05503 Paired box 54 178

Links

Other Paired box family TFs
Other Caenorhabditis remanei TFs

205 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBN07010 Caenorhabditis brenneri CBN07010 I 0.992
CBN25998 Caenorhabditis brenneri CBN25998 I 0.992
pax-1 Caenorhabditis elegans WBGene00003937 I 0.968
CBG24786 Caenorhabditis briggsae CBG24786 I 0.931
CJA06788 Caenorhabditis japonica CJA06788 I 0.896
PEQ_0000430901 Parascaris equorum PEQ_0000430901 I 0.784
EVEC_0000163101 Enterobius vermicularis EVEC_0000163101 I 0.776
SMUV_0000337801 Syphacia muris SMUV_0000337801 I 0.776
HHAL005838-PA Halyomorpha halys HHAL005838-PA I 0.769
ASU_08322 Ascaris suum ASU_08322 I 0.768
ALUE_0000964501 Ascaris lumbricoides ALUE_0000964501 I 0.768
TCNE_0001785701 Toxocara canis TCNE_0001785701 I 0.760
ASIS022893 Anopheles sinensis ASIS022893 I 0.755
AFUN001734 Anopheles funestus AFUN001734 I 0.755
GH17421 Drosophila grimshawi FBgn0124891 I 0.752
GF16668 Drosophila ananassae FBgn0093689 I 0.752
Poxm Drosophila melanogaster FBgn0003129 D 0.752
GK14101 Drosophila willistoni FBgn0216107 I 0.752
GG17455 Drosophila erecta FBgn0109681 I 0.752
GA21910 Drosophila pseudoobscura FBgn0081895 I 0.752
GM26349 Drosophila sechellia FBgn0181202 I 0.752
GJ22751 Drosophila virilis FBgn0209855 I 0.752
LCUP007799 Lucilia cuprina LCUP007799 I 0.752
GE24855 Drosophila yakuba FBgn0241954 I 0.752
GL24118 Drosophila persimilis FBgn0161708 I 0.752
GI22750 Drosophila mojavensis FBgn0145477 I 0.752
AQUA002471 Anopheles quadriannulatus AQUA002471 I 0.744
AMEM000130 Anopheles merus AMEM000130 I 0.744
AMIN005066 Anopheles minimus AMIN005066 I 0.744
AMEC017516 Anopheles melas AMEC017516 I 0.744
ACUA000500 Anopheles culicifacies ACUA000500 I 0.744
AARA001070 Anopheles arabiensis AARA001070 I 0.744
AALB006349 Anopheles albimanus AALB006349 I 0.744
PHUM515110 Pediculus humanus PHUM515110 I 0.744
AATE019429 Anopheles atroparvus AATE019429 I 0.744
ADIR000995 Anopheles dirus ADIR000995 I 0.744
AFAF006072 Anopheles farauti AFAF006072 I 0.744
AEPI005638 Anopheles epiroticus AEPI005638 I 0.744
AMAM000649 Anopheles maculatus AMAM000649 I 0.744
ASTEI07741 Anopheles stephensi ASTEI07741 I 0.744
L893_g11572 Steinernema glaseri L893_g11572 I 0.744
AGAP001493 Anopheles gambiae AGAP001493 I 0.744
PPAI009002 Phlebotomus papatasi PPAI009002 I 0.744
ADAC006866 Anopheles darlingi ADAC006866 I 0.744
MDOA001030 Musca domestica MDOA001030 I 0.744
LLOJ004808 Lutzomyia longipalpis LLOJ004808 I 0.744
ISCW011634 Ixodes scapularis ISCW011634 I 0.736
L898_g3148 Steinernema monticolum L898_g3148 I 0.736
ACEP27324 Atta cephalotes ACEP27324 I 0.736
YQE_12494 Dendroctonus ponderosae YQE_12494 I 0.728
SMAR007866 Strigamia maritima SMAR007866 I 0.728
CLEC012019 Cimex lectularius CLEC012019 I 0.728
SINV15629 Solenopsis invicta SINV15629 I 0.728
GB52620 Apis mellifera GB52620 I 0.728
TC008838 Tribolium castaneum TC008838 I 0.728
NV11293 Nasonia vitripennis NV11293 I 0.728
DAPPUDRAFT_307722 Daphnia pulex DAPPUDRAFT_307722 I 0.728
Cflo_08772--XP_001121954.1_APIME Camponotus floridanus Cflo_08772--XP_001121954.1_APIME I 0.728
SSTP_0000083300 Strongyloides stercoralis SSTP_0000083300 I 0.728
L596_g23601 Steinernema carpocapsae L596_g23601 I 0.728
DICVIV_10778 Dictyocaulus viviparus DICVIV_10778 I 0.728
ANCCEY_02265 Ancylostoma ceylanicum ANCCEY_02265 I 0.728
ACOC_0000962101 Angiostrongylus costaricensis ACOC_0000962101 I 0.728
L892_g31296 Steinernema scapterisci L892_g31296 I 0.728
L889_g19368 Steinernema feltiae L889_g19368 I 0.728
SPAL_0000396700 Strongyloides papillosus SPAL_0000396700 I 0.728
ENSTSYG00000008085 Tarsius syrichta ENSTSYG00000008085 I 0.727
PAX5 Tupaia belangeri ENSTBEG00000007983 I 0.727
PAX5 Tursiops truncatus ENSTTRG00000006049 I 0.727
ANCCAN_01783 Ancylostoma caninum ANCCAN_01783 I 0.726
HMEL004481 Heliconius melpomene HMEL004481 I 0.720
SVE_0281100 Strongyloides venezuelensis SVE_0281100 I 0.720
CapteG64892 Capitella teleta CapteG64892 I 0.720
HPBE_0001739601 Heligmosomoides bakeri HPBE_0001739601 I 0.720
KGM_09724 Danaus plexippus KGM_09724 I 0.720
BGIBMGA000787 Bombyx mori BGIBMGA000787 I 0.720
RPRC009438 Rhodnius prolixus RPRC009438 I 0.716
ENSONIG00000018717 Oreochromis niloticus ENSONIG00000018717 I 0.712
ENSTNIG00000002104 Tetraodon nigroviridis ENSTNIG00000002104 I 0.712
pax9 Tetraodon nigroviridis ENSTNIG00000019284 I 0.712
ENSPFOG00000017550 Poecilia formosa ENSPFOG00000017550 I 0.712
ENSXMAG00000015762 Xiphophorus maculatus ENSXMAG00000015762 I 0.712
ENSLOCG00000013992 Lepisosteus oculatus ENSLOCG00000013992 I 0.712
pax9 Danio rerio ENSDARG00000053829 D 0.712
pax9 Takifugu rubripes ENSTRUG00000011965 I 0.712
ACAC_0001249001 Angiostrongylus cantonensis ACAC_0001249001 I 0.712
Sakowv30044183m.g Saccoglossus kowalevskii Sakowv30044183m.g I 0.712
pax9 Gasterosteus aculeatus ENSGACG00000011298 I 0.712
HPLM_0000508801 Haemonchus placei HPLM_0000508801 I 0.712
nDi.2.2.2.g06454 Dirofilaria immitis nDi.2.2.2.g06454 N 0.712
ENSLACG00000015921 Latimeria chalumnae ENSLACG00000015921 I 0.712
ACYPI005583 Acyrthosiphon pisum ACYPI005583 I 0.712
ENSONIG00000000990 Oreochromis niloticus ENSONIG00000000990 I 0.712
ENSAMXG00000002161 Astyanax mexicanus ENSAMXG00000002161 I 0.712
ENSGMOG00000009128 Gadus morhua ENSGMOG00000009128 I 0.712
PAX9 Pteropus vampyrus ENSPVAG00000003728 I 0.707
ENSXMAG00000019114 Xiphophorus maculatus ENSXMAG00000019114 I 0.704
TELCIR_14257 Teladorsagia circumcincta TELCIR_14257 I 0.704
PAX1 Tursiops truncatus ENSTTRG00000002444 I 0.704
SBAD_0000488901 Soboliphyme baturini SBAD_0000488901 I 0.704
pax9.L Xenopus laevis XB-GENE-864845 I 0.704
ENSBTAP00000008861-D1 Bos grunniens ENSBTAP00000008861-D1 I 0.704
ENSP00000355245 Macaca fascicularis ENSP00000355245 I 0.704
Alligator_sinensis_CCG004503.1 Alligator sinensis Alligator_sinensis_CCG004503.1 I 0.704
Afo_R004464 Aptenodytes forsteri Afo_R004464 I 0.704
Aan_R005718 Calypte anna Aan_R005718 I 0.704
ENSP00000381499 Macaca fascicularis ENSP00000381499 I 0.704
ENSP00000384817-D1 Bos grunniens ENSP00000384817-D1 I 0.704
pax9 Xenopus tropicalis XB-GENE-482238 I 0.704
pax1 Xenopus tropicalis XB-GENE-487951 I 0.704
Pvit_17942 Pogona vitticeps Pvit_17942 I 0.704
Ogr19508 Ophisaurus gracilis Ogr19508 I 0.704
Ogr18451 Ophisaurus gracilis Ogr18451 I 0.704
pax1.S Xenopus laevis XB-GENE-865751 I 0.704
ENSSSCG00000001943 Sus scrofa ENSSSCG00000001943 I 0.704
PAX1 Felis catus ENSFCAG00000004293 I 0.704
PAX1 Homo sapiens ENSG00000125813 D 0.704
PAX9 Homo sapiens ENSG00000198807 D 0.704
pax1a Gasterosteus aculeatus ENSGACG00000006987 I 0.704
PAX9 Felis catus ENSFCAG00000001024 I 0.704
ENSFALG00000006155 Ficedula albicollis ENSFALG00000006155 I 0.704
Pax1 Dipodomys ordii ENSDORG00000016051 I 0.704
PAX9 Equus caballus ENSECAG00000023712 I 0.704
PAX1 Erinaceus europaeus ENSEEUG00000007846 I 0.704
PAX9 Echinops telfairi ENSETEG00000002086 I 0.704
PAX9 Gallus gallus ENSGALG00000010114 I 0.704
ENSGALG00000028576 Gallus gallus ENSGALG00000028576 I 0.704
ENSLOCG00000016871 Lepisosteus oculatus ENSLOCG00000016871 I 0.704
ENSMEUG00000002095 Macropus eugenii ENSMEUG00000002095 I 0.704
ENSMEUG00000010140 Macropus eugenii ENSMEUG00000010140 I 0.704
PAX9 Microcebus murinus ENSMICG00000010808 I 0.704
PAX9 Loxodonta africana ENSLAFG00000017541 I 0.704
ENSLACG00000009610 Latimeria chalumnae ENSLACG00000009610 I 0.704
PAX9 Gorilla gorilla ENSGGOG00000001528 I 0.704
PAX1 Gorilla gorilla ENSGGOG00000016075 I 0.704
ENSGMOG00000018913 Gadus morhua ENSGMOG00000018913 I 0.704
PAX1 Dasypus novemcinctus ENSDNOG00000033546 I 0.704
PAX9 Dasypus novemcinctus ENSDNOG00000000352 I 0.704
ENSAMXG00000018287 Astyanax mexicanus ENSAMXG00000018287 I 0.704
ENSAPLG00000012856 Anas platyrhynchos ENSAPLG00000012856 I 0.704
PAX1 Bos taurus ENSBTAG00000006742 I 0.704
PAX9 Bos taurus ENSBTAG00000009186 I 0.704
ENSAMXG00000008583 Astyanax mexicanus ENSAMXG00000008583 I 0.704
ENSAMEG00000012642 Ailuropoda melanoleuca ENSAMEG00000012642 I 0.704
ENSACAG00000001481 Anolis carolinensis ENSACAG00000001481 I 0.704
ENSACAG00000010563 Anolis carolinensis ENSACAG00000010563 I 0.704
ENSAMEG00000002906 Ailuropoda melanoleuca ENSAMEG00000002906 I 0.704
PAX1 Canis familiaris ENSCAFG00000005170 I 0.704
PAX9 Canis familiaris ENSCAFG00000013690 I 0.704
ENSCSAG00000015463 Chlorocebus sabaeus ENSCSAG00000015463 I 0.704
ENSCSAVG00000007806 Ciona savignyi ENSCSAVG00000007806 I 0.704
pax1a Danio rerio ENSDARG00000008203 I 0.704
pax1b Danio rerio ENSDARG00000073814 I 0.704
ENSCSAG00000011068 Chlorocebus sabaeus ENSCSAG00000011068 I 0.704
PAX9 Cavia porcellus ENSCPOG00000010951 I 0.704
PAX1 Callithrix jacchus ENSCJAG00000005773 I 0.704
PAX9 Callithrix jacchus ENSCJAG00000016460 I 0.704
PAX1 Cavia porcellus ENSCPOG00000002886 I 0.704
pax1a Takifugu rubripes ENSTRUG00000008079 I 0.704
PAX9 Myotis lucifugus ENSMLUG00000011407 I 0.704
ENSPSIG00000010961 Pelodiscus sinensis ENSPSIG00000010961 I 0.704
PAX9 Pan troglodytes ENSPTRG00000006281 I 0.704
PAX1 Pan troglodytes ENSPTRG00000013311 I 0.704
PAX1 Pteropus vampyrus ENSPVAG00000002604 I 0.704
ENSPPYG00000010758 Pongo abelii ENSPPYG00000010758 I 0.704
ENSPPYG00000005755 Pongo abelii ENSPPYG00000005755 I 0.704
ENSPANG00000008282 Papio anubis ENSPANG00000008282 I 0.704
PAX1 Procavia capensis ENSPCAG00000003556 I 0.704
ENSPFOG00000003208 Poecilia formosa ENSPFOG00000003208 I 0.704
ENSPMAG00000010308 Petromyzon marinus ENSPMAG00000010308 I 0.704
Pax9 Rattus norvegicus ENSRNOG00000008826 I 0.704
PAX9 Sorex araneus ENSSARG00000000337 I 0.704
PAX9 Tupaia belangeri ENSTBEG00000002460 I 0.704
ENSTGUG00000007526 Taeniopygia guttata ENSTGUG00000007526 I 0.704
PAX9 Taeniopygia guttata ENSTGUG00000012015 I 0.704
pax1a Tetraodon nigroviridis ENSTNIG00000016891 I 0.704
ENSSTOG00000015730 Ictidomys tridecemlineatus ENSSTOG00000015730 I 0.704
ENSSTOG00000003000 Ictidomys tridecemlineatus ENSSTOG00000003000 I 0.704
ENSSHAG00000005531 Sarcophilus harrisii ENSSHAG00000005531 I 0.704
ENSSHAG00000017556 Sarcophilus harrisii ENSSHAG00000017556 I 0.704
PAX1 Sus scrofa ENSSSCG00000007112 I 0.704
PAX1 Myotis lucifugus ENSMLUG00000014710 I 0.704
ENSPANG00000000932 Papio anubis ENSPANG00000000932 I 0.704
ENSMPUG00000016259 Mustela putorius furo ENSMPUG00000016259 I 0.704
Pax9 Mus musculus ENSMUSG00000001497 I 0.704
Pax1 Mus musculus ENSMUSG00000037034 I 0.704
ENSNLEG00000003346 Nomascus leucogenys ENSNLEG00000003346 I 0.704
ENSMPUG00000001187 Mustela putorius furo ENSMPUG00000001187 I 0.704
PAX9 Monodelphis domestica ENSMODG00000012681 I 0.704
PAX9 Macaca mulatta ENSMMUG00000009648 I 0.704
PAX1 Macaca mulatta ENSMMUG00000019409 I 0.704
PAX1 Monodelphis domestica ENSMODG00000006198 I 0.704
pax1 Oryzias latipes ENSORLG00000017412 I 0.704
ENSNLEG00000010049 Nomascus leucogenys ENSNLEG00000010049 I 0.704
ENSOGAG00000013131 Otolemur garnettii ENSOGAG00000013131 I 0.704
PAX1 Otolemur garnettii ENSOGAG00000033162 I 0.704
ENSONIG00000008137 Oreochromis niloticus ENSONIG00000008137 I 0.704
PAX1 Ornithorhynchus anatinus ENSOANG00000002008 I 0.704
PAX1 Oryctolagus cuniculus ENSOCUG00000003276 I 0.704
PAX9 Ornithorhynchus anatinus ENSOANG00000014065 I 0.704
PAX1 Ochotona princeps ENSOPRG00000017249 I 0.704
ENSOARG00000004951 Ovis aries ENSOARG00000004951 I 0.704
ENSOARG00000008050 Ovis aries ENSOARG00000008050 I 0.704
SVUK_0000340101 Strongylus vulgaris SVUK_0000340101 I 0.703
PAX1 Loxodonta africana ENSLAFG00000008908 I 0.702