CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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tetur04g02670
(
Tetranychus urticae
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00292 (PAX)
IPR001523
tetur04g02670
T312097_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Poxn
M03946_2.00
Drosophila melanogaster
DGCGTGACSGTCACGSY
RSCGTGACSGTCACGCH
SELEX
Nitta et al.(2015)
Poxn_1
0.760
0.760
Poxn
M03947_2.00
Drosophila melanogaster
RSCGKGACSGTTMCGSW
WSCGKAACSGTCMCGSY
SELEX
Nitta et al.(2015)
Poxn_2
0.760
0.760
Poxn
M03948_2.00
Drosophila melanogaster
NCGTTCCGGAACGD
HCGTTCCGGAACGN
SELEX
Nitta et al.(2015)
Poxn_3
0.760
0.760
Poxn
M06437_2.00
Drosophila melanogaster
RSCGTGACG
CGTCACGSY
B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130
0.760
0.760
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.712
0.712
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN
NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.712
0.712
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.712
0.712
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.712
0.712
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.712
0.712
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.712
0.712
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.712
0.712
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.712
0.712
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.712
0.712
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.712
0.712
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.712
0.712
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.712
0.712
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.712
0.712
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG
CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.712
0.712
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.712
0.712
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.712
0.712
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.712
0.712
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.712
0.712
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.712
0.712
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.712
0.712
PAX5
M11210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.712
0.712
PAX5
M11211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.712
0.712
PAX5
M11212_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.712
0.712
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
tetur04g02670.1
Paired box
5
143
GQAGINQLGGLFVNGRPLPLHVRQRIIELALMGVRPCDISRQLLVSHGCVSKILTRFYETGSIKPGSIGGSKPKHVTTPHIVKKILKLKQENPALFAWEIRDLLRREILQSRSNDNRFNQGSDINLSVPSISSINRILR
Links
Other
Paired box
family TFs
Other
Tetranychus urticae
TFs
142 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CPIJ009206
Culex quinquefasciatus
CPIJ009206
I
0.829
CpipJ_CPIJ009206
Culex pipiens
CpipJ_CPIJ009206
I
0.829
NV12756
Nasonia vitripennis
NV12756
I
0.792
LCUP005878
Lucilia cuprina
LCUP005878
I
0.776
SMAR001091
Strigamia maritima
SMAR001091
I
0.776
MDOA010966
Musca domestica
MDOA010966
I
0.776
AFUN008226
Anopheles funestus
AFUN008226
I
0.773
AMEM011238
Anopheles merus
AMEM011238
I
0.768
AMEC005358
Anopheles melas
AMEC005358
I
0.768
AATE014886
Anopheles atroparvus
AATE014886
I
0.768
ACOM039288
Anopheles coluzzii
ACOM039288
I
0.768
AFAF002012
Anopheles farauti
AFAF002012
I
0.768
AGAP008818
Anopheles gambiae
AGAP008818
I
0.768
LotgiG99097
Lottia gigantea
LotgiG99097
I
0.768
Ocbimv22007901m.g
Octopus bimaculoides
Ocbimv22007901m.g
I
0.760
GI19757
Drosophila mojavensis
FBgn0142494
I
0.760
GM20119
Drosophila sechellia
FBgn0175002
I
0.760
GA20926
Drosophila pseudoobscura
FBgn0080915
I
0.760
Poxn
Drosophila melanogaster
FBgn0003130
D
0.760
GE14129
Drosophila yakuba
FBgn0231752
I
0.760
GK19611
Drosophila willistoni
FBgn0221609
I
0.760
GL11851
Drosophila persimilis
FBgn0149459
I
0.760
GG22332
Drosophila erecta
FBgn0114504
I
0.760
GJ18164
Drosophila virilis
FBgn0205329
I
0.760
ASIS007673
Anopheles sinensis
ASIS007673
I
0.760
LLOJ000106
Lutzomyia longipalpis
LLOJ000106
I
0.760
GD25595
Drosophila simulans
FBgn0196881
I
0.760
GH20564
Drosophila grimshawi
FBgn0128027
I
0.752
GB53602
Apis mellifera
GB53602
I
0.752
KGM_01567
Danaus plexippus
KGM_01567
I
0.752
HMEL002901
Heliconius melpomene
HMEL002901
I
0.752
TC008672
Tribolium castaneum
TC008672
I
0.752
Sakowv30025789m.g
Saccoglossus kowalevskii
Sakowv30025789m.g
I
0.752
CGI_10012686
Crassostrea gigas
CGI_10012686
I
0.752
Hsal_04457--XP_001122746.1_APIME
Harpegnathos saltator
Hsal_04457--XP_001122746.1_APIME
I
0.752
GF13369
Drosophila ananassae
FBgn0090401
I
0.752
CapteG166874
Capitella teleta
CapteG166874
I
0.752
SPU_027334
Strongylocentrotus purpuratus
SPU_027334
I
0.736
OESDEN_18680
Oesophagostomum dentatum
OESDEN_18680
I
0.727
CGI_10024166
Crassostrea gigas
CGI_10024166
I
0.720
pax2b
Takifugu rubripes
ENSTRUG00000011987
I
0.720
LLOJ002076
Lutzomyia longipalpis
LLOJ002076
I
0.720
Cflo_00736--XP_001122746.1_APIME
Camponotus floridanus
Cflo_00736--XP_001122746.1_APIME
I
0.720
LCUP011945
Lucilia cuprina
LCUP011945
I
0.713
GL18401
Drosophila persimilis
FBgn0156002
I
0.712
ENSTSYG00000001117
Tarsius syrichta
ENSTSYG00000001117
I
0.712
pax2a
Takifugu rubripes
ENSTRUG00000008891
I
0.712
ENSTNIG00000005391
Tetraodon nigroviridis
ENSTNIG00000005391
I
0.712
sv
Drosophila melanogaster
FBgn0005561
D
0.712
GG16406
Drosophila erecta
FBgn0108638
I
0.712
GH23966
Drosophila grimshawi
FBgn0131423
I
0.712
GI14046
Drosophila mojavensis
FBgn0136800
I
0.712
Aan_R002178
Calypte anna
Aan_R002178
I
0.712
Myotis_brandtii_PAX5_10017827
Myotis brandtii
Myotis_brandtii_PAX5_10017827
I
0.712
Gfo_R013093
Geospiza fortis
Gfo_R013093
I
0.712
ENSP00000350844
Macaca fascicularis
ENSP00000350844
I
0.712
Pvit_15554
Pogona vitticeps
Pvit_15554
I
0.712
Ocbimv22007526m.g
Octopus bimaculoides
Ocbimv22007526m.g
I
0.712
XP_002935920
Xenopus tropicalis
XP_002935920
I
0.712
pax2
Xenopus tropicalis
XB-GENE-486801
D
0.712
ENSP00000350844-D1
Bos grunniens
ENSP00000350844-D1
I
0.712
Brh_R001926
Buceros rhinoceros
Brh_R001926
I
0.712
GE14566
Drosophila yakuba
FBgn0232164
I
0.712
GK13586
Drosophila willistoni
FBgn0215594
I
0.712
GJ13730
Drosophila virilis
FBgn0200951
I
0.712
spa-sv
Drosophila pseudoobscura
FBgn0249275
I
0.712
MESCA003563
Megaselia scalaris
MESCA003563
I
0.712
Afo_R005136
Aptenodytes forsteri
Afo_R005136
I
0.712
PAX2
Homo sapiens
ENSG00000075891
D
0.712
GD24421
Drosophila simulans
FBgn0195757
I
0.712
PAX5
Taeniopygia guttata
ENSTGUG00000007215
I
0.712
Pax-2
Gallus gallus
ENSGALG00000005689
I
0.712
Pax5B
Gallus gallus
ENSGALG00000016431
D
0.712
pax2a
Gasterosteus aculeatus
ENSGACG00000008391
I
0.712
PAX5
Homo sapiens
ENSG00000196092
D
0.712
PAX5
Felis catus
ENSFCAG00000001628
I
0.712
PAX5
Gorilla gorilla
ENSGGOG00000003633
I
0.712
ENSGMOG00000012561
Gadus morhua
ENSGMOG00000012561
I
0.712
PAX5
Monodelphis domestica
ENSMODG00000002720
I
0.712
ENSMPUG00000006012
Mustela putorius furo
ENSMPUG00000006012
I
0.712
PAX5
Myotis lucifugus
ENSMLUG00000012652
I
0.712
PAX5
Microcebus murinus
ENSMICG00000017679
I
0.712
PAX5
Loxodonta africana
ENSLAFG00000028851
I
0.712
ENSFALG00000012983
Ficedula albicollis
ENSFALG00000012983
I
0.712
PAX5
Echinops telfairi
ENSETEG00000002360
I
0.712
PAX5
Canis familiaris
ENSCAFG00000002357
I
0.712
PAX5
Choloepus hoffmanni
ENSCHOG00000003521
I
0.712
PAX5
Bos taurus
ENSBTAG00000012498
I
0.712
ENSAMEG00000010127
Ailuropoda melanoleuca
ENSAMEG00000010127
I
0.712
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.712
PAX5
Callithrix jacchus
ENSCJAG00000010379
I
0.712
PAX5
Cavia porcellus
ENSCPOG00000009987
I
0.712
PAX5
Equus caballus
ENSECAG00000000551
I
0.712
PAX5
Erinaceus europaeus
ENSEEUG00000012531
I
0.712
pax2b
Danio rerio
ENSDARG00000032578
D
0.712
pax2a
Danio rerio
ENSDARG00000028148
I
0.712
ENSCSAG00000010751
Chlorocebus sabaeus
ENSCSAG00000010751
I
0.712
Pax5
Mus musculus
ENSMUSG00000014030
D
0.712
ENSLACG00000013159
Latimeria chalumnae
ENSLACG00000013159
I
0.712
ENSPFOG00000013202
Poecilia formosa
ENSPFOG00000013202
I
0.712
ENSSSCG00000005345
Sus scrofa
ENSSSCG00000005345
I
0.712
ENSPFOG00000003702
Poecilia formosa
ENSPFOG00000003702
I
0.712
PAX5
Procavia capensis
ENSPCAG00000004660
I
0.712
ENSNLEG00000003664
Nomascus leucogenys
ENSNLEG00000003664
I
0.712
ENSPPYG00000019064
Pongo abelii
ENSPPYG00000019064
I
0.712
PAX5
Pteropus vampyrus
ENSPVAG00000000054
I
0.712
PAX5
Pan troglodytes
ENSPTRG00000020936
I
0.712
Pax5
Rattus norvegicus
ENSRNOG00000024729
I
0.712
PAX5
Ochotona princeps
ENSOPRG00000000734
I
0.712
ENSPANG00000025475
Papio anubis
ENSPANG00000025475
I
0.712
ENSOGAG00000004773
Otolemur garnettii
ENSOGAG00000004773
I
0.712
ENSSTOG00000024354
Ictidomys tridecemlineatus
ENSSTOG00000024354
I
0.712
PAX5
Oryctolagus cuniculus
ENSOCUG00000012281
I
0.712
ENSOARG00000011518
Ovis aries
ENSOARG00000011518
I
0.712
PAX5
Ornithorhynchus anatinus
ENSOANG00000007579
I
0.712
ENSONIG00000018496
Oreochromis niloticus
ENSONIG00000018496
I
0.712
ENSONIG00000016065
Oreochromis niloticus
ENSONIG00000016065
I
0.712
pax5.L
Xenopus laevis
XB-GENE-865318
I
0.704
ENSXMAG00000003038
Xiphophorus maculatus
ENSXMAG00000003038
I
0.704
ENSXMAG00000012680
Xiphophorus maculatus
ENSXMAG00000012680
I
0.704
PAX5
Anolis carolinensis
ENSACAG00000011646
I
0.704
CapteG119889
Capitella teleta
CapteG119889
I
0.704
pax5
Takifugu rubripes
ENSTRUG00000003227
I
0.704
DAPPUDRAFT_311028
Daphnia pulex
DAPPUDRAFT_311028
I
0.704
ENSSHAG00000012375
Sarcophilus harrisii
ENSSHAG00000012375
I
0.704
ENSLOCG00000012825
Lepisosteus oculatus
ENSLOCG00000012825
I
0.704
ENSAMXG00000012274
Astyanax mexicanus
ENSAMXG00000012274
I
0.704
GF20618
Drosophila ananassae
FBgn0097624
I
0.704
TC003570
Tribolium castaneum
TC003570
I
0.704
pax2b
Oryzias latipes
ENSORLG00000009321
I
0.704
ENSGMOG00000000463
Gadus morhua
ENSGMOG00000000463
I
0.704
pax5
Tetraodon nigroviridis
ENSTNIG00000005085
I
0.704
ENSLOCG00000005490
Lepisosteus oculatus
ENSLOCG00000005490
I
0.704
ENSPSIG00000003215
Pelodiscus sinensis
ENSPSIG00000003215
I
0.704
Alligator_sinensis_CCG012866.1
Alligator sinensis
Alligator_sinensis_CCG012866.1
I
0.704
PAX5
Dasypus novemcinctus
ENSDNOG00000035956
I
0.704
pax5
Danio rerio
ENSDARG00000037383
I
0.704
pax2b
Gasterosteus aculeatus
ENSGACG00000002432
I
0.704
ENSPFOG00000022164
Poecilia formosa
ENSPFOG00000022164
I
0.704
ENSPFOG00000011719
Poecilia formosa
ENSPFOG00000011719
I
0.704
PAX2
Loxodonta africana
ENSLAFG00000002388
I
0.702
BGIBMGA013358
Bombyx mori
BGIBMGA013358
I
0.702