CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cmyd_10002921
(
Chelonia mydas
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00292 (PAX)
IPR001523
Cmyd_10002921
T312150_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.795
0.795
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.795
0.795
PAX8
M11205_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.795
0.795
PAX8
M11206_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.795
0.795
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.795
0.795
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.740
0.740
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN
NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.740
0.740
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.740
0.740
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.740
0.740
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.740
0.740
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.740
0.740
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.740
0.740
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.740
0.740
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.740
0.740
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.740
0.740
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG
CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.740
0.740
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.740
0.740
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.740
0.740
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.740
0.740
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.740
0.740
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.740
0.740
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.740
0.740
PAX5
M11210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.740
0.740
PAX5
M11211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.740
0.740
PAX5
M11212_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.740
0.740
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cmyd_10002921
Paired box
4
76
GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRIIRTKVQQPFNLPMDNC
Links
Other
Paired box
family TFs
Other
Chelonia mydas
TFs
148 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ogr05570
Ophisaurus gracilis
Ogr05570
I
1.000
Pax5
Mus musculus
ENSMUSG00000014030
D
0.836
PAX5
Homo sapiens
ENSG00000196092
D
0.836
PAX5
Callithrix jacchus
ENSCJAG00000010379
I
0.836
pax8
Xenopus tropicalis
XB-GENE-483693
I
0.795
ENSMPUG00000009512
Mustela putorius furo
ENSMPUG00000009512
I
0.795
Pax8
Mus musculus
ENSMUSG00000026976
I
0.795
ENSNLEG00000002157
Nomascus leucogenys
ENSNLEG00000002157
I
0.795
PAX8
Oryctolagus cuniculus
ENSOCUG00000004187
I
0.795
PAX8
Ornithorhynchus anatinus
ENSOANG00000010554
I
0.795
PAX8
Monodelphis domestica
ENSMODG00000013770
I
0.795
PAX8
Macaca mulatta
ENSMMUG00000011578
I
0.795
PAX8
Gorilla gorilla
ENSGGOG00000004587
I
0.795
pax8.L
Xenopus laevis
XB-GENE-865008
I
0.795
PAX8
Loxodonta africana
ENSLAFG00000021590
I
0.795
ENSMEUG00000013983
Macropus eugenii
ENSMEUG00000013983
I
0.795
PAX8
Myotis lucifugus
ENSMLUG00000011936
I
0.795
PAX8
Microcebus murinus
ENSMICG00000003265
I
0.795
PAX8
Otolemur garnettii
ENSOGAG00000009418
I
0.795
PAX8
Ochotona princeps
ENSOPRG00000012910
I
0.795
ENSSTOG00000024664
Ictidomys tridecemlineatus
ENSSTOG00000024664
I
0.795
ENSSSCG00000021332
Sus scrofa
ENSSSCG00000021332
I
0.795
PAX8
Tupaia belangeri
ENSTBEG00000008679
I
0.795
PAX8
Tursiops truncatus
ENSTTRG00000011948
I
0.795
ENSP00000395498
Macaca fascicularis
ENSP00000395498
I
0.795
ENSP00000263334-D1
Bos grunniens
ENSP00000263334-D1
I
0.795
ENSSHAG00000011845
Sarcophilus harrisii
ENSSHAG00000011845
I
0.795
Pax8
Rattus norvegicus
ENSRNOG00000026203
D
0.795
PAX8
Homo sapiens
ENSG00000125618
D
0.795
ENSPANG00000016994
Papio anubis
ENSPANG00000016994
I
0.795
PAX8
Procavia capensis
ENSPCAG00000005498
I
0.795
ENSPPYG00000012184
Pongo abelii
ENSPPYG00000012184
I
0.795
PAX8
Pteropus vampyrus
ENSPVAG00000005666
I
0.795
PAX8
Pan troglodytes
ENSPTRG00000012380
I
0.795
Myotis_brandtii_Pax8_10002304
Myotis brandtii
Myotis_brandtii_Pax8_10002304
I
0.795
ENSOARG00000020812
Ovis aries
ENSOARG00000020812
I
0.795
PAX8
Bos taurus
ENSBTAG00000019354
I
0.795
PAX8
Erinaceus europaeus
ENSEEUG00000003041
I
0.795
ENSCSAG00000016682
Chlorocebus sabaeus
ENSCSAG00000016682
I
0.795
ENSAMEG00000010662
Ailuropoda melanoleuca
ENSAMEG00000010662
I
0.795
PAX8
Canis familiaris
ENSCAFG00000007309
I
0.795
PAX8
Cavia porcellus
ENSCPOG00000012011
I
0.795
PAX8
Felis catus
ENSFCAG00000009580
I
0.795
PAX8
Callithrix jacchus
ENSCJAG00000013889
I
0.795
Alligator_sinensis_CCG013279.1
Alligator sinensis
Alligator_sinensis_CCG013279.1
I
0.767
ENSAMXG00000009227
Astyanax mexicanus
ENSAMXG00000009227
I
0.753
pax8
Takifugu rubripes
ENSTRUG00000018667
I
0.753
pax8
Danio rerio
ENSDARG00000015879
I
0.753
LotgiG135549
Lottia gigantea
LotgiG135549
I
0.753
ENSONIG00000000205
Oreochromis niloticus
ENSONIG00000000205
I
0.753
ENSPFOG00000019830
Poecilia formosa
ENSPFOG00000019830
I
0.753
pax8
Gasterosteus aculeatus
ENSGACG00000016747
I
0.753
ENSGMOG00000011083
Gadus morhua
ENSGMOG00000011083
I
0.753
ENSLACG00000003762
Latimeria chalumnae
ENSLACG00000003762
I
0.753
PAX5
Choloepus hoffmanni
ENSCHOG00000003521
I
0.740
ENSSSCG00000005345
Sus scrofa
ENSSSCG00000005345
I
0.740
PAX5
Bos taurus
ENSBTAG00000012498
I
0.740
ENSSTOG00000024354
Ictidomys tridecemlineatus
ENSSTOG00000024354
I
0.740
PAX5
Pteropus vampyrus
ENSPVAG00000000054
I
0.740
PAX5
Canis familiaris
ENSCAFG00000002357
I
0.740
ENSPPYG00000019064
Pongo abelii
ENSPPYG00000019064
I
0.740
ENSAMXG00000005158
Astyanax mexicanus
ENSAMXG00000005158
I
0.740
PAX5
Pan troglodytes
ENSPTRG00000020936
I
0.740
ENSPFOG00000011719
Poecilia formosa
ENSPFOG00000011719
I
0.740
ENSPFOG00000013202
Poecilia formosa
ENSPFOG00000013202
I
0.740
Pax5
Rattus norvegicus
ENSRNOG00000024729
I
0.740
pax2a
Takifugu rubripes
ENSTRUG00000008891
I
0.740
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.740
Myotis_brandtii_PAX5_10017827
Myotis brandtii
Myotis_brandtii_PAX5_10017827
I
0.740
Gfo_R013093
Geospiza fortis
Gfo_R013093
I
0.740
ENSACAG00000011033
Anolis carolinensis
ENSACAG00000011033
I
0.740
Ogr18043
Ophisaurus gracilis
Ogr18043
I
0.740
Pvit_15554
Pogona vitticeps
Pvit_15554
I
0.740
XP_002935920
Xenopus tropicalis
XP_002935920
I
0.740
pax2
Xenopus tropicalis
XB-GENE-486801
D
0.740
Pax2
Rattus norvegicus
ENSRNOG00000014253
I
0.740
ENSP00000350844
Macaca fascicularis
ENSP00000350844
I
0.740
ENSP00000350844-D1
Bos grunniens
ENSP00000350844-D1
I
0.740
ENSTSYG00000001117
Tarsius syrichta
ENSTSYG00000001117
I
0.740
PAX5
Procavia capensis
ENSPCAG00000004660
I
0.740
pax5
Takifugu rubripes
ENSTRUG00000003227
I
0.740
pax5
Tetraodon nigroviridis
ENSTNIG00000005085
I
0.740
ENSAMEG00000010127
Ailuropoda melanoleuca
ENSAMEG00000010127
I
0.740
ENSXMAG00000012680
Xiphophorus maculatus
ENSXMAG00000012680
I
0.740
Brh_R001926
Buceros rhinoceros
Brh_R001926
I
0.740
Afo_R005136
Aptenodytes forsteri
Afo_R005136
I
0.740
Aan_R002178
Calypte anna
Aan_R002178
I
0.740
PAX5
Taeniopygia guttata
ENSTGUG00000007215
I
0.740
ENSPFOG00000003702
Poecilia formosa
ENSPFOG00000003702
I
0.740
PAX5
Equus caballus
ENSECAG00000000551
I
0.740
PAX5
Microcebus murinus
ENSMICG00000017679
I
0.740
PAX5
Erinaceus europaeus
ENSEEUG00000012531
I
0.740
PAX5
Myotis lucifugus
ENSMLUG00000012652
I
0.740
ENSPANG00000025475
Papio anubis
ENSPANG00000025475
I
0.740
pax5
Danio rerio
ENSDARG00000037383
I
0.740
ENSMPUG00000006012
Mustela putorius furo
ENSMPUG00000006012
I
0.740
PAX5
Monodelphis domestica
ENSMODG00000002720
I
0.740
ENSMEUG00000011758
Macropus eugenii
ENSMEUG00000011758
I
0.740
ENSLOCG00000015261
Lepisosteus oculatus
ENSLOCG00000015261
I
0.740
Pax5B
Gallus gallus
ENSGALG00000016431
D
0.740
Pax-2
Gallus gallus
ENSGALG00000005689
I
0.740
PAX5
Felis catus
ENSFCAG00000001628
I
0.740
PAX5
Gorilla gorilla
ENSGGOG00000003633
I
0.740
ENSFALG00000012983
Ficedula albicollis
ENSFALG00000012983
I
0.740
PAX5
Loxodonta africana
ENSLAFG00000028851
I
0.740
PAX5
Echinops telfairi
ENSETEG00000002360
I
0.740
ENSLACG00000013159
Latimeria chalumnae
ENSLACG00000013159
I
0.740
pax2b
Danio rerio
ENSDARG00000032578
D
0.740
Pax5
Dipodomys ordii
ENSDORG00000015818
I
0.740
PAX5
Cavia porcellus
ENSCPOG00000009987
I
0.740
PAX5
Oryctolagus cuniculus
ENSOCUG00000012281
I
0.740
ENSCSAG00000010751
Chlorocebus sabaeus
ENSCSAG00000010751
I
0.740
PAX5
Ochotona princeps
ENSOPRG00000000734
I
0.740
ENSOGAG00000004773
Otolemur garnettii
ENSOGAG00000004773
I
0.740
ENSONIG00000016065
Oreochromis niloticus
ENSONIG00000016065
I
0.740
ENSONIG00000018496
Oreochromis niloticus
ENSONIG00000018496
I
0.740
pax2a
Danio rerio
ENSDARG00000028148
I
0.740
ENSOARG00000011518
Ovis aries
ENSOARG00000011518
I
0.740
PAX2
Homo sapiens
ENSG00000075891
D
0.740
pax8
Oryzias latipes
ENSORLG00000007225
I
0.740
PAX5
Ornithorhynchus anatinus
ENSOANG00000007579
I
0.740
ENSNLEG00000003664
Nomascus leucogenys
ENSNLEG00000003664
I
0.740
pax5.L
Xenopus laevis
XB-GENE-865318
I
0.726
ENSGMOG00000000463
Gadus morhua
ENSGMOG00000000463
I
0.726
ENSLOCG00000012825
Lepisosteus oculatus
ENSLOCG00000012825
I
0.726
pax2b
Oryzias latipes
ENSORLG00000009321
I
0.726
pax2b
Gasterosteus aculeatus
ENSGACG00000002432
I
0.726
PAX5
Anolis carolinensis
ENSACAG00000011646
I
0.726
pax5
Oryzias latipes
ENSORLG00000005326
I
0.726
CapteG119889
Capitella teleta
CapteG119889
I
0.726
pax5
Gasterosteus aculeatus
ENSGACG00000016112
I
0.726
pax2a
Gasterosteus aculeatus
ENSGACG00000008391
I
0.726
ENSONIG00000008952
Oreochromis niloticus
ENSONIG00000008952
I
0.726
PAX5
Macaca mulatta
ENSMMUG00000019639
I
0.726
pax2b
Takifugu rubripes
ENSTRUG00000011987
I
0.726
ENSSHAG00000012375
Sarcophilus harrisii
ENSSHAG00000012375
I
0.726
pax8
Tetraodon nigroviridis
ENSTNIG00000009029
I
0.726
PAX5
Dasypus novemcinctus
ENSDNOG00000035956
I
0.726
ENSPSIG00000003215
Pelodiscus sinensis
ENSPSIG00000003215
I
0.726
ENSAMXG00000012274
Astyanax mexicanus
ENSAMXG00000012274
I
0.726
Alligator_sinensis_CCG012866.1
Alligator sinensis
Alligator_sinensis_CCG012866.1
I
0.726
ENSLOCG00000005490
Lepisosteus oculatus
ENSLOCG00000005490
I
0.726
tetur29g01000
Tetranychus urticae
tetur29g01000
I
0.726
SPU_014539
Strongylocentrotus purpuratus
SPU_014539
I
0.726
PAX8
Vicugna pacos
ENSVPAG00000003973
I
0.726
ENSXMAG00000003038
Xiphophorus maculatus
ENSXMAG00000003038
I
0.726
Ocbimv22007526m.g
Octopus bimaculoides
Ocbimv22007526m.g
I
0.712
ENSTNIG00000005391
Tetraodon nigroviridis
ENSTNIG00000005391
I
0.712