CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh1_kg.C_140377
(
Phytophthora capsici
)
Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF05225 (HTH_psq)
IPR007889
estExt_fgenesh1_kg.C_140377
T314737_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Phyra78816
M02437_2.00
Phytophthora ramorum
NNYRNWACAN
NTGTWNYRNN
PBM
Weirauch et al.(2014)
pTH7817
0.925
0.925
For this family, TFs with SR scores >
0.778
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_kg.C_140377
Pipsqueak
308
348
ETWEKAIAAVEQQGMSLRAAAKMYGVHFAALHRRVKKRAQG
Links
Other
Pipsqueak
family TFs
Other
Phytophthora capsici
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Physo143675
Phytophthora sojae
Physo143675
I
0.975
Physo143676
Phytophthora sojae
Physo143676
I
0.975
PITG_11246
Phytophthora infestans
PITG_11246
I
0.975
fgenesh_scip_prom.28083.10252
Phytophthora lateralis
fgenesh_scip_prom.28083.10252
I
0.975
fgenesh_scip_prom.46568.1708
Phytophthora kernoviae
fgenesh_scip_prom.46568.1708
I
0.950
PITG_00015
Phytophthora infestans
PITG_00015
I
0.950
Phyra95221
Phytophthora ramorum
Phyra95221
I
0.925
Phyra78816
Phytophthora ramorum
Phyra78816
D
0.925
PITG_00016
Phytophthora infestans
PITG_00016
I
0.864
fgenesh_scip_prom.28083.11902
Phytophthora lateralis
fgenesh_scip_prom.28083.11902
N
0.825