cassava20325.m1 (Manihot esculenta)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04640 (PLATZ) IPR006734 cassava20325.m1 T315875_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G01818
M07247_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT2G01818_col_a
0.718 0.718
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava20325.m1 PLATZ 60 137

Links

Other PLATZ family TFs
Other Manihot esculenta TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.718
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.731
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.731
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.885
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.872
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.872
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.846
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.872
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.846
Lus10030763.g Linum usitatissimum Lus10030763.g I 0.821
MDP0000290118 Malus domestica MDP0000290118 I 0.923
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.897
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.872
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.731
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.731
PK02661.1 Cannabis sativa PK02661.1 I 0.846
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.885
TCM_011266 Theobroma cacao TCM_011266 I 0.872
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.910
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I 0.910
Pm005894 Prunus mume Pm005894 I 0.910
29968.m000644 Ricinus communis 29968.m000644 I 0.962
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.731
Bo7g078820 Brassica oleracea Bo7g078820 I 0.718
PGSC0003DMG400029466 Solanum tuberosum PGSC0003DMG400029466 N 0.782
Lus10028998.g Linum usitatissimum Lus10028998.g N 0.756
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.859
Lus10003680.g Linum usitatissimum Lus10003680.g N 0.744
Solyc04g008090.2 Solanum lycopersicum Solyc04g008090.2 N 0.795
VIT_01s0011g06060 Vitis vinifera VIT_01s0011g06060 N 0.846
Cla005897 Citrullus lanatus Cla005897 N 0.833
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.859
cassava40347.m1 Manihot esculenta cassava40347.m1 N 0.859
Cucsa.012070 Cucumis sativus Cucsa.012070 N 0.833
mgf026615m Mimulus guttatus mgf026615m N 0.769