AT2G01818 (Arabidopsis thaliana)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04640 (PLATZ) IPR006734 AT2G01818 T315207_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and, together with ARF7, is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G01818
M07247_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT2G01818_col_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G01818.1 PLATZ 69 146
AT2G01818.2 PLATZ 5 82

Links

Other PLATZ family TFs
Other Arabidopsis thaliana TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.949
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.910
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.910
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.910
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.910
Bo7g078820 Brassica oleracea Bo7g078820 I 0.910
Bo2g134600 Brassica oleracea Bo2g134600 I 0.885
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.764
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.756
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.756
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.744
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I 0.731
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.731
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.731
Pm005894 Prunus mume Pm005894 I 0.731
29968.m000644 Ricinus communis 29968.m000644 I 0.731
Lus10030763.g Linum usitatissimum Lus10030763.g I 0.718
MDP0000290118 Malus domestica MDP0000290118 I 0.718
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.718
cassava20325.m1 Manihot esculenta cassava20325.m1 I 0.718
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.718
TCM_011266 Theobroma cacao TCM_011266 I 0.718
PK02661.1 Cannabis sativa PK02661.1 I 0.705
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.705
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.705