Carubv10017978m.g (Capsella rubella)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04640 (PLATZ) IPR006734 Carubv10017978m.g T315990_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G01818
M07247_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT2G01818_col_a
0.910 0.910
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017978m PLATZ 72 149

Links

Other PLATZ family TFs
Other Capsella rubella TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29968.m000644 Ricinus communis 29968.m000644 I 0.744
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.910
Bo2g134600 Brassica oleracea Bo2g134600 I 0.949
Bo7g078820 Brassica oleracea Bo7g078820 I 0.974
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.974
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 1.000
cassava20325.m1 Manihot esculenta cassava20325.m1 I 0.731
cassava40347.m1 Manihot esculenta cassava40347.m1 N 0.705
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.744
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.731
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.744
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.974
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.744
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.718
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.756
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.744
Lus10030763.g Linum usitatissimum Lus10030763.g I 0.718
MDP0000290118 Malus domestica MDP0000290118 I 0.705
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.744
PK02661.1 Cannabis sativa PK02661.1 I 0.731
Pm005894 Prunus mume Pm005894 I 0.718
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.744
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.744
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I 0.718
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.764
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.718
TCM_011266 Theobroma cacao TCM_011266 I 0.731
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.962