RKD1 (Arabidopsis thaliana)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 AT1G18790 T319890_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RKD2
M07249_2.00
Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN

NDRGAAGHYGAANVGWCDN
Dap-seq
OMalley et al.(2016)
RKD2_col_a
0.857 0.857
RKD2
M07250_2.00
Arabidopsis thaliana
GWCBBTTCRDMTTCC

GGAAKHYGAAVVGWC
Dap-seq
OMalley et al.(2016)
RKD2_colamp_a
0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G18790.1 RWP-RK 127 175

Links

Other RWP-RK family TFs
Other Arabidopsis thaliana TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29900.m001561 Ricinus communis 29900.m001561 I 0.000
AC233933.1_FG001 Zea mays AC233933.1_FG001 I 0.000
BGIOSGA024428 Oryza indica BGIOSGA024428 I 0.000
BGIOSGA024429 Oryza indica BGIOSGA024429 I 0.000
BGIOSGA031313 Oryza indica BGIOSGA031313 I 0.000
BRADI4G38930 Brachypodium distachyon BRADI4G38930 I 0.000
F775_22648 Aegilops tauschii F775_22648 N 0.000
F775_22649 Aegilops tauschii F775_22649 N 0.000
Gorai.013G186800 Gossypium raimondii Gorai.013G186800 I 0.000
GRMZM2G073258 Zea mays GRMZM2G073258 I 0.000
GRMZM2G123119 Zea mays GRMZM2G123119 I 0.000
GRMZM5G837876 Zea mays GRMZM5G837876 I 0.000
GSMUA_AchrUn_randomG10760_001 Musa acuminata GSMUA_AchrUn_randomG10760_001 I 0.000
LPERR07G06830 Leersia perrieri LPERR07G06830 I 0.000
LPERR09G16380 Leersia perrieri LPERR09G16380 I 0.000
MDP0000322279 Malus domestica MDP0000322279 I 0.000
mgf022372m Mimulus guttatus mgf022372m I 0.000
MLOC_43207 Hordeum vulgare MLOC_43207 I 0.000
MTR_1g069940 Medicago truncatula MTR_1g069940 I 0.000
MTR_7g096830 Medicago truncatula MTR_7g096830 I 0.000
OB09G27130 Oryza brachyantha OB09G27130 I 0.000
OBART07G11330 Oryza barthii OBART07G11330 I 0.000
OBART07G11340 Oryza barthii OBART07G11340 I 0.000
OBART09G20410 Oryza barthii OBART09G20410 I 0.000
OGLUM07G10870 Oryza glumaepatula OGLUM07G10870 I 0.000
OGLUM07G10880 Oryza glumaepatula OGLUM07G10880 I 0.000
OGLUM09G21150 Oryza glumaepatula OGLUM09G21150 I 0.000
OLONG_005597 Oryza longistaminata OLONG_005597 I 0.000
ONIVA01G50300 Oryza nivara ONIVA01G50300 I 0.000
ONIVA07G09500 Oryza nivara ONIVA07G09500 I 0.000
ONIVA09G20840 Oryza nivara ONIVA09G20840 I 0.000
OPUNC07G10310 Oryza punctata OPUNC07G10310 I 0.000
OPUNC09G18690 Oryza punctata OPUNC09G18690 I 0.000
ORGLA07G0097000 Oryza glaberrima ORGLA07G0097000 I 0.000
ORGLA07G0097100 Oryza glaberrima ORGLA07G0097100 I 0.000
ORUFI07G11580 Oryza rufipogon ORUFI07G11580 I 0.000
ORUFI07G11590 Oryza rufipogon ORUFI07G11590 I 0.000
ORUFI09G22040 Oryza rufipogon ORUFI09G22040 I 0.000
OS07G0410700 Oryza sativa OS07G0410700 I 0.000
OS09G0572000 Oryza sativa OS09G0572000 I 0.000
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I 0.000
Pavir.Ba02781 Panicum virgatum Pavir.Ba02781 I 0.000
Pavir.Bb00962 Panicum virgatum Pavir.Bb00962 I 0.000
Pavir.Ha00304 Panicum virgatum Pavir.Ha00304 I 0.000
Pavir.Ha00307 Panicum virgatum Pavir.Ha00307 I 0.000
Pavir.Ha01200 Panicum virgatum Pavir.Ha01200 I 0.000
Pavir.Ha01264 Panicum virgatum Pavir.Ha01264 I 0.000
Pavir.Hb01074 Panicum virgatum Pavir.Hb01074 I 0.000
Pavir.Hb01336 Panicum virgatum Pavir.Hb01336 I 0.000
Pavir.J01078 Panicum virgatum Pavir.J01078 I 0.000
Pavir.J02630 Panicum virgatum Pavir.J02630 I 0.000
Pavir.J30299 Panicum virgatum Pavir.J30299 I 0.000
Pavir.J37124 Panicum virgatum Pavir.J37124 I 0.000
Sb02g012630 Sorghum bicolor Sb02g012630 I 0.000
Sb05g026843 Sorghum bicolor Sb05g026843 I 0.000
Si027485m.g Setaria italica Si027485m.g I 0.000
Si028088m.g Setaria italica Si028088m.g I 0.000
Si028135m.g Setaria italica Si028135m.g I 0.000
Si028219m.g Setaria italica Si028219m.g I 0.000
Si031946m.g Setaria italica Si031946m.g I 0.000
Traes_2AL_9E90C2488 Triticum aestivum Traes_2AL_9E90C2488 N 0.000
Traes_2BL_304012B04 Triticum aestivum Traes_2BL_304012B04 N 0.000
Traes_2BL_3A3353970 Triticum aestivum Traes_2BL_3A3353970 N 0.000
Traes_2BS_0EE99D4A6 Triticum aestivum Traes_2BS_0EE99D4A6 I 0.000
Traes_4AS_9450AD3F4 Triticum aestivum Traes_4AS_9450AD3F4 I 0.000
Traes_4DS_9C01B536B Triticum aestivum Traes_4DS_9C01B536B I 0.000
TRIUR3_16508 Triticum urartu TRIUR3_16508 I 0.000
TRIUR3_29784 Triticum urartu TRIUR3_29784 I 0.000