fgenesh1_pg.C_scaffold_2001738 (Arabidopsis lyrata)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 fgenesh1_pg.C_scaffold_2001738 T320035_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RKD2
M07249_2.00
Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN

NDRGAAGHYGAANVGWCDN
Dap-seq
OMalley et al.(2016)
RKD2_col_a
0.939 0.939
RKD2
M07250_2.00
Arabidopsis thaliana
GWCBBTTCRDMTTCC

GGAAKHYGAAVVGWC
Dap-seq
OMalley et al.(2016)
RKD2_colamp_a
0.939 0.939
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_2001738 RWP-RK 134 182

Links

Other RWP-RK family TFs
Other Arabidopsis lyrata TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.000
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.000
IDD14 Arabidopsis thaliana AT1G68130 I 0.000
SGR5 Arabidopsis thaliana AT2G01940 D 0.000
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.000
BGIOSGA030871 Oryza indica BGIOSGA030871 I 0.000
Bo2g134790 Brassica oleracea Bo2g134790 I 0.000
Bo3g139880 Brassica oleracea Bo3g139880 I 0.000
Bo5g043540 Brassica oleracea Bo5g043540 I 0.000
Bo6g097320 Brassica oleracea Bo6g097320 I 0.000
Bo6g106560 Brassica oleracea Bo6g106560 I 0.000
Bo9g070370 Brassica oleracea Bo9g070370 I 0.000
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.000
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.000
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.000
Bra004050 Brassica rapa Bra004050 I 0.000
Bra004283 Brassica rapa Bra004283 I 0.000
Bra010981 Brassica rapa Bra010981 I 0.000
Bra017432 Brassica rapa Bra017432 I 0.000
Bra024771 Brassica rapa Bra024771 I 0.000
Bra026624 Brassica rapa Bra026624 I 0.000
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.000
BRADI3G37890 Brachypodium distachyon BRADI3G37890 I 0.000
BRADI4G31770 Brachypodium distachyon BRADI4G31770 I 0.000
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.000
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.000
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.000
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.000
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.000
Carubv10020337m.g Capsella rubella Carubv10020337m.g I 0.000
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.000
Ca_22171 Cicer arietinum Ca_22171 I 0.000
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.000
Cla005913 Citrullus lanatus Cla005913 I 0.000
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.000
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.000
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.000
F775_43255 Aegilops tauschii F775_43255 I 0.000
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.000
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.000
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.000
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.000
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.000
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.000
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.000
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.000
GRMZM2G110107 Zea mays GRMZM2G110107 I 0.000
GRMZM2G123094 Zea mays GRMZM2G123094 I 0.000
GRMZM2G141031 Zea mays GRMZM2G141031 I 0.000
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.000
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.000
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.000
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.000
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.000
LPERR08G14510 Leersia perrieri LPERR08G14510 I 0.000
LPERR09G08790 Leersia perrieri LPERR09G08790 I 0.000
mgf008235m Mimulus guttatus mgf008235m I 0.000
MLOC_57613 Hordeum vulgare MLOC_57613 I 0.000
OB09G18760 Oryza brachyantha OB09G18760 I 0.000
OBART08G17550 Oryza barthii OBART08G17550 I 0.000
OBART09G12250 Oryza barthii OBART09G12250 I 0.000
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.000
OGLUM08G18370 Oryza glumaepatula OGLUM08G18370 I 0.000
OGLUM09G12720 Oryza glumaepatula OGLUM09G12720 I 0.000
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.000
OMERI08G14120 Oryza meridionalis OMERI08G14120 I 0.000
OMERI09G13410 Oryza meridionalis OMERI09G13410 I 0.000
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.000
ONIVA08G19430 Oryza nivara ONIVA08G19430 I 0.000
ONIVA09G13010 Oryza nivara ONIVA09G13010 I 0.000
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.000
OPUNC08G15410 Oryza punctata OPUNC08G15410 I 0.000
OPUNC09G10740 Oryza punctata OPUNC09G10740 I 0.000
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.000
ORGLA08G0153600 Oryza glaberrima ORGLA08G0153600 I 0.000
ORGLA09G0092400 Oryza glaberrima ORGLA09G0092400 I 0.000
ORGLA09G0169200 Oryza glaberrima ORGLA09G0169200 I 0.000
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.000
ORUFI09G13180 Oryza rufipogon ORUFI09G13180 I 0.000
OS03G0237250 Oryza sativa OS03G0237250 I 0.000
OS08G0467100 Oryza sativa OS08G0467100 I 0.000
Pavir.Ba02057 Panicum virgatum Pavir.Ba02057 I 0.000
Pavir.Fa00691 Panicum virgatum Pavir.Fa00691 I 0.000
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.000
Pavir.J40191 Panicum virgatum Pavir.J40191 I 0.000
PK17145.1 Cannabis sativa PK17145.1 I 0.000
Pm005926 Prunus mume Pm005926 I 0.000
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.000
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.000
Sb02g026230 Sorghum bicolor Sb02g026230 I 0.000
Sb07g022700 Sorghum bicolor Sb07g022700 I 0.000
Si029726m.g Setaria italica Si029726m.g I 0.000
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.000
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.000
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.000
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.000