OLONG_016325 (Oryza longistaminata)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 OLONG_016325 T320593_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RKD2
M07249_2.00
Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN

NDRGAAGHYGAANVGWCDN
Dap-seq
OMalley et al.(2016)
RKD2_col_a
0.735 0.735
RKD2
M07250_2.00
Arabidopsis thaliana
GWCBBTTCRDMTTCC

GGAAKHYGAAVVGWC
Dap-seq
OMalley et al.(2016)
RKD2_colamp_a
0.735 0.735
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OLONG_016325-R1 RWP-RK 115 163

Links

Other RWP-RK family TFs
Other Oryza longistaminata TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.703
RKD2 Arabidopsis thaliana AT1G74480 D 0.735
BGIOSGA005630 Oryza indica BGIOSGA005630 I 0.980
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.796
BRADI1G45170 Brachypodium distachyon BRADI1G45170 N 0.735
BRADI3G59410 Brachypodium distachyon BRADI3G59410 N 0.796
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.714
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.714
F775_00225 Aegilops tauschii F775_00225 I 0.776
F775_07483 Aegilops tauschii F775_07483 I 0.755
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.714
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.776
LPERR02G26470 Leersia perrieri LPERR02G26470 N 0.878
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.776
MDP0000266172 Malus domestica MDP0000266172 I 0.714
mg020279m Mimulus guttatus mg020279m I 0.714
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.816
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.796
OB02G39310 Oryza brachyantha OB02G39310 I 0.898
OB06G17750 Oryza brachyantha OB06G17750 I 0.796
OBART02G32320 Oryza barthii OBART02G32320 I 0.980
OGLUM02G32960 Oryza glumaepatula OGLUM02G32960 I 0.980
OMERI02G30990 Oryza meridionalis OMERI02G30990 I 0.959
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.796
ONIVA06G04700 Oryza nivara ONIVA06G04700 I 0.980
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.796
OPUNC02G29870 Oryza punctata OPUNC02G29870 I 0.918
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.796
ORGLA02G0278600 Oryza glaberrima ORGLA02G0278600 I 0.980
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.796
ORUFI02G34010 Oryza rufipogon ORUFI02G34010 I 0.980
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.796
OS06G0228950 Oryza sativa OS06G0228950 I 0.796
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.796
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.816
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.816
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.816
Pavir.J14787 Panicum virgatum Pavir.J14787 N 0.774
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.714
Sb04g028040 Sorghum bicolor Sb04g028040 N 0.735
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.816
Si008273m.g Setaria italica Si008273m.g I 0.816
Si019159m.g Setaria italica Si019159m.g N 0.783
Si020172m.g Setaria italica Si020172m.g I 0.730
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.776
Traes_6DL_8ECBBC867 Triticum aestivum Traes_6DL_8ECBBC867 I 0.776
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.755
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.796