POPTR_0001s13890 (Populus trichocarpa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 POPTR_0001s13890 T322943_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.912 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s13890.1 SBP 181 255

Links

Other SBP family TFs
Other Populus trichocarpa TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL10 Arabidopsis thaliana AT1G27370 D 0.912
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.968
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.909
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.986
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.978
29929.m004641 Ricinus communis 29929.m004641 I 0.982
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.985
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.979
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.965
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.890
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.890
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.966
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.901
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.890
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.980
mgf019346m Mimulus guttatus mgf019346m I 0.975
Ca_11356 Cicer arietinum Ca_11356 I 0.958
Ca_08506 Cicer arietinum Ca_08506 I 0.886
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.978
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.987
Bra010949 Brassica rapa Bra010949 I 0.888
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.978
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.987
Bo7g049950 Brassica oleracea Bo7g049950 I 0.894
Bo7g049940 Brassica oleracea Bo7g049940 I 0.920
Bo5g051980 Brassica oleracea Bo5g051980 I 0.903
Bo5g051970 Brassica oleracea Bo5g051970 I 0.903
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.909
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.987
Bra030040 Brassica rapa Bra030040 I 0.898
Bra030041 Brassica rapa Bra030041 I 0.922
Bra032823 Brassica rapa Bra032823 I 0.903
Si017520m.g Setaria italica Si017520m.g N 0.908
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.933
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.915
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N 0.916
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.918
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.933
SPL4 Oryza sativa OS02G0174100 N 0.926
OS02G0139400 Oryza sativa OS02G0139400 N 0.925
TRIUR3_09477 Triticum urartu TRIUR3_09477 N 0.915
SPL11 Oryza sativa OS06G0663500 N 0.907
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.955
SPL12 Oryza sativa OS06G0703500 N 0.927
Si017749m.g Setaria italica Si017749m.g N 0.967
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.962
Solyc04g045560.2 Solanum lycopersicum Solyc04g045560.2 N 0.923
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.944
Sb04g003175 Sorghum bicolor Sb04g003175 N 0.903
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N 0.933
TCM_008772 Theobroma cacao TCM_008772 N 0.974
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.962
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.915
SPL2 Vitis vinifera VIT_11s0065g00170 N 0.919
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.963
Pavir.Aa03225 Panicum virgatum Pavir.Aa03225 N 0.906
Pavir.Ab00358 Panicum virgatum Pavir.Ab00358 N 0.906
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.969
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.969
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.916
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.962
PK16953.1 Cannabis sativa PK16953.1 N 0.966
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.953
MDP0000155354 Malus domestica MDP0000155354 N 0.961
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.940
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N 0.934
Pm007020 Prunus mume Pm007020 N 0.961
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.970
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.968
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.976
mgf010397m Mimulus guttatus mgf010397m N 0.977
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.955
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.961
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.961
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.963
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.970
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.927
SPL2 Arabidopsis thaliana AT5G43270 N 0.962
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.939
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.961
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.961
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.933
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.943
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.948
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.955
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.941
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.944
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.960
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.928
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.926
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.929
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.944
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.944
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.924
SPL3 Oryza indica BGIOSGA007499 N 0.925
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.926
SPL12 Oryza indica BGIOSGA020577 N 0.927
BGIOSGA020731 Oryza indica BGIOSGA020731 N 0.907
Bo7g065290 Brassica oleracea Bo7g065290 N 0.964
Bo9g058970 Brassica oleracea Bo9g058970 N 0.962
Bra027478 Brassica rapa Bra027478 N 0.962
Bra033671 Brassica rapa Bra033671 N 0.962
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N 0.914
F775_31908 Aegilops tauschii F775_31908 N 0.918
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.942
GLYMA18G00903 Glycine max GLYMA18G00903 N 0.902
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.924
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.915
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.935
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.955
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.925
ONIVA02G05960 Oryza nivara ONIVA02G05960 N 0.902
ONIVA06G27990 Oryza nivara ONIVA06G27990 N 0.907
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.927
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.922
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.926
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.926
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.925
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.926
ORGLA06G0199900 Oryza glaberrima ORGLA06G0199900 N 0.907
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.927
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.925
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.926
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.927
OMERI06G23750 Oryza meridionalis OMERI06G23750 N 0.907
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.926
OB02G12930 Oryza brachyantha OB02G12930 N 0.929
OB02G14840 Oryza brachyantha OB02G14840 N 0.928
OB06G31550 Oryza brachyantha OB06G31550 N 0.907
OB06G34330 Oryza brachyantha OB06G34330 N 0.910
OBART02G03260 Oryza barthii OBART02G03260 N 0.925
OBART06G23820 Oryza barthii OBART06G23820 N 0.907
OBART06G26610 Oryza barthii OBART06G26610 N 0.927
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.926
OGLUM06G25070 Oryza glumaepatula OGLUM06G25070 N 0.907
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.927
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.927
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.925
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.925
ORUFI06G25590 Oryza rufipogon ORUFI06G25590 N 0.907