29726.m003959 (Ricinus communis)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 29726.m003959 T323217_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL7
M02476_2.00
Arabidopsis thaliana
DGTACKDNN

NNHMGTACH
PBM
Weirauch et al.(2014)
pTH7288
0.974 0.880
SPL7
M00888_2.00
Arabidopsis thaliana
GGRGDAAAGG

CCTTTHCYCC
PBM
Franco-Zorrilla et al.(2014)
SPL7
0.974 0.880
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29726.m003959 SBP 147 221

Links

Other SBP family TFs
Other Ricinus communis TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL7 Arabidopsis thaliana AT5G18830 D 0.974
PK29723.1 Cannabis sativa PK29723.1 I 0.957
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.972
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.972
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.941
mgf004695m Mimulus guttatus mgf004695m I 0.955
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.973
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.974
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.974
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.949
Pm008092 Prunus mume Pm008092 I 0.944
Cla022022 Citrullus lanatus Cla022022 I 0.973
Ca_00550 Cicer arietinum Ca_00550 I 0.961
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.974
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.975
TCM_021101 Theobroma cacao TCM_021101 I 0.969
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.972
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.977
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.972
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.935
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.945
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.973
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.976
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.977
MDP0000271587 Malus domestica MDP0000271587 I 0.946
MDP0000195461 Malus domestica MDP0000195461 I 0.934
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.969
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.969
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.967
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.958
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.943
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.978
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.974
Si021754m.g Setaria italica Si021754m.g I 0.974
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.962
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.974
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.976
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.954
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.971
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.969
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.974
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.975
F775_04392 Aegilops tauschii F775_04392 I 0.970
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.957
Bra023695 Brassica rapa Bra023695 I 0.951
Bra002188 Brassica rapa Bra002188 I 0.969
Bo9g154530 Brassica oleracea Bo9g154530 I 0.969
Bo00629s160 Brassica oleracea Bo00629s160 I 0.951
OB05G24080 Oryza brachyantha OB05G24080 I 0.974
OBART05G16150 Oryza barthii OBART05G16150 I 0.974
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.895
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.889
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.972
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.974
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.944
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.945
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.966
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.974
SPL9 Oryza sativa OS05G0408200 I 0.974
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.974
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.972
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.974
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.974
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.974
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.972