CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J00965
(
Panicum virgatum
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Pavir.J00965
T323639_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL7
M02476_2.00
Arabidopsis thaliana
DGTACKDNN
NNHMGTACH
PBM
Weirauch et al.(2014)
pTH7288
0.971
0.827
SPL7
M00888_2.00
Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC
PBM
Franco-Zorrilla et al.(2014)
SPL7
0.971
0.827
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J00965.1.p
SBP
180
254
CQVPGCEADIRELKGYHRRHRVCLRCAHASAVLLDGVQKRYCQQCGKFHVLLDFDEDKRSCRRKLERHNKRRRRK
Links
Other
SBP
family TFs
Other
Panicum virgatum
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGABI2DRAFT_191713
Agaricus bisporus
AGABI2DRAFT_191713
N
0.000
BN946_scf184908.g73
Trametes cinnabarina
BN946_scf184908.g73
N
0.000
BOTBODRAFT_26713
Botryobasidium botryosum
BOTBODRAFT_26713
N
0.000
BOTBODRAFT_26714
Botryobasidium botryosum
BOTBODRAFT_26714
N
0.000
BOTBODRAFT_72561
Botryobasidium botryosum
BOTBODRAFT_72561
N
0.000
CC1G_00050
Coprinopsis cinerea
CC1G_00050
N
0.000
CERSUDRAFT_111398
Ceriporiopsis subvermispora
CERSUDRAFT_111398
N
0.000
CY34DRAFT_808328
Suillus luteus
CY34DRAFT_808328
N
0.000
DICSQDRAFT_61352
Dichomitus squalens
DICSQDRAFT_61352
N
0.000
e_gw1.4.2249.1
Heterobasidion annosum
e_gw1.4.2249.1
N
0.000
fgenesh1_pg.C_scaffold_2000701
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_2000701
N
0.000
FIBRA_01455
Fibroporia radiculosa
FIBRA_01455
N
0.000
FOMPIDRAFT_138732
Fomitopsis pinicola
FOMPIDRAFT_138732
N
0.000
GALMADRAFT_23139
Galerina marginata
GALMADRAFT_23139
N
0.000
GLOTRDRAFT_55344
Gloeophyllum trabeum
GLOTRDRAFT_55344
N
0.000
HETIRDRAFT_240562
Heterobasidion irregulare
HETIRDRAFT_240562
N
0.000
JAAARDRAFT_28293
Jaapia argillacea
JAAARDRAFT_28293
N
0.000
K443DRAFT_672537
Laccaria amethystina
K443DRAFT_672537
N
0.000
M378DRAFT_8932
Amanita muscaria
M378DRAFT_8932
N
0.000
M404DRAFT_92668
Pisolithus tinctorius
M404DRAFT_92668
N
0.000
M407DRAFT_127438
Tulasnella calospora
M407DRAFT_127438
N
0.000
M407DRAFT_91983
Tulasnella calospora
M407DRAFT_91983
N
0.000
M408DRAFT_220715
Serendipita vermifera
M408DRAFT_220715
N
0.000
M408DRAFT_326089
Serendipita vermifera
M408DRAFT_326089
N
0.000
M413DRAFT_440930
Hebeloma cylindrosporum
M413DRAFT_440930
N
0.000
Moror_1059
Moniliophthora roreri
Moror_1059
N
0.000
PAXRUDRAFT_13206
Paxillus rubicundulus
PAXRUDRAFT_13206
N
0.000
PHACADRAFT_249397
Phanerochaete carnosa
PHACADRAFT_249397
N
0.000
PHLGIDRAFT_35648
Phlebiopsis gigantea
PHLGIDRAFT_35648
N
0.000
PIIN_03370
Piriformospora indica
PIIN_03370
N
0.000
PILCRDRAFT_811082
Piloderma croceum
PILCRDRAFT_811082
N
0.000
PISMIDRAFT_670921
Pisolithus microcarpus
PISMIDRAFT_670921
N
0.000
PLEOSDRAFT_1029614
Pleurotus ostreatus
PLEOSDRAFT_1029614
N
0.000
SCHCODRAFT_47142
Schizophyllum commune
SCHCODRAFT_47142
N
0.000
SCLCIDRAFT_1210054
Scleroderma citrinum
SCLCIDRAFT_1210054
N
0.000
V565_004480
Rhizoctonia solani
V565_004480
I
0.000
V565_033130
Rhizoctonia solani
V565_033130
N
0.000
V565_035960
Rhizoctonia solani
V565_035960
N
0.000