CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava29286.valid.m1
(
Manihot esculenta
)
Sigma 70
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF04542 (Sigma70_r2)
IPR007627
cassava29286.valid.m1
T324091_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava29286.valid.m1
Sigma 70
269
340
IIKHNLRLILFVIKKHFHDFANGPRFQDLCQAGVKGLITAIDRFEPERRFRLSTYSFFWIRHAIIRSMTLAS
Links
Other
Sigma 70
family TFs
Other
Manihot esculenta
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PK06897.1
Cannabis sativa
PK06897.1
N
0.826
Carubv10000608m.g
Capsella rubella
Carubv10000608m.g
N
0.783
Cagra.8922s0001
Capsella grandiflora
Cagra.8922s0001
N
0.783
Bostr.10199s0021
Boechera stricta
Bostr.10199s0021
N
0.783
Aquca_037_00091
Aquilegia coerulea
Aquca_037_00091
N
0.797
mgf006107m
Mimulus guttatus
mgf006107m
N
0.812
mgf001401m
Mimulus guttatus
mgf001401m
N
0.783
Cucsa.012950
Cucumis sativus
Cucsa.012950
N
0.841
cassava7220.valid.m1
Manihot esculenta
cassava7220.valid.m1
N
0.913
Ciclev10004760m.g
Citrus clementina
Ciclev10004760m.g
N
0.884
evm.TU.supercontig_3.54
Carica papaya
evm.TU.supercontig_3.54
N
0.855
gene13107-v1.0-hybrid
Fragaria vesca
gene13107-v1.0-hybrid
N
0.870
Thhalv10004166m.g
Eutrema salsugineum
Thhalv10004166m.g
N
0.768
SapurV1A.4845s0010
Salix purpurea
SapurV1A.4845s0010
N
0.855
SapurV1A.1227s0040
Salix purpurea
SapurV1A.1227s0040
N
0.855
SapurV1A.0377s0060
Salix purpurea
SapurV1A.0377s0060
N
0.870
orange1.1g010092m.g
Citrus sinensis
orange1.1g010092m.g
N
0.884
MDP0000831937
Malus domestica
MDP0000831937
N
0.826
Lus10014934.g
Linum usitatissimum
Lus10014934.g
N
0.754
Gorai.008G270500
Gossypium raimondii
Gorai.008G270500
N
0.899
30169.m006532
Ricinus communis
30169.m006532
N
0.855
Pm019782
Prunus mume
Pm019782
N
0.812
GLYMA13G08390
Glycine max
GLYMA13G08390
N
0.812
GLYMA06G13100
Glycine max
GLYMA06G13100
N
0.870
GLYMA04G41691
Glycine max
GLYMA04G41691
N
0.884
SIGE
Arabidopsis lyrata
fgenesh2_kg.6__2403__AT5G24120.1
N
0.768
Bra026466
Brassica rapa
Bra026466
N
0.768
Bra009735
Brassica rapa
Bra009735
N
0.710
Bo9g013770
Brassica oleracea
Bo9g013770
N
0.768
Bo7g097160
Brassica oleracea
Bo7g097160
N
0.710
GLYMA14G31370
Glycine max
GLYMA14G31370
N
0.797
GSMUA_Achr7G24590_001
Musa acuminata
GSMUA_Achr7G24590_001
N
0.768
MTR_3g090900
Medicago truncatula
MTR_3g090900
N
0.870
Cla004302
Citrullus lanatus
Cla004302
N
0.841
Ca_03953
Cicer arietinum
Ca_03953
N
0.870
SIGE
Vitis vinifera
VIT_16s0050g02520
N
0.841
TCM_015349
Theobroma cacao
TCM_015349
N
0.884
Solyc03g007370.2
Solanum lycopersicum
Solyc03g007370.2
N
0.797
PRUPE_ppa004259mg
Prunus persica
PRUPE_ppa004259mg
N
0.841
POPTR_0012s01430
Populus trichocarpa
POPTR_0012s01430
N
0.855
PGSC0003DMG400009072
Solanum tuberosum
PGSC0003DMG400009072
N
0.826
SIGE
Arabidopsis thaliana
AT5G24120
N
0.768