cassava29286.valid.m1 (Manihot esculenta)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 cassava29286.valid.m1 T324091_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava29286.valid.m1 Sigma 70 269 340

Links

Other Sigma 70 family TFs
Other Manihot esculenta TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.913
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.899
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.884
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.884
TCM_015349 Theobroma cacao TCM_015349 N 0.884
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.884
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.870
Ca_03953 Cicer arietinum Ca_03953 N 0.870
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.870
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.870
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.870
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.855
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.855
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.855
30169.m006532 Ricinus communis 30169.m006532 N 0.855
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.855
Cla004302 Citrullus lanatus Cla004302 N 0.841
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.841
SIGE Vitis vinifera VIT_16s0050g02520 N 0.841
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.841
PK06897.1 Cannabis sativa PK06897.1 N 0.826
MDP0000831937 Malus domestica MDP0000831937 N 0.826
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.826
mgf006107m Mimulus guttatus mgf006107m N 0.812
Pm019782 Prunus mume Pm019782 N 0.812
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.812
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.797
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.797
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.797
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.783
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.783
mgf001401m Mimulus guttatus mgf001401m N 0.783
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.783
Bra026466 Brassica rapa Bra026466 N 0.768
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.768
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.768
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.768
SIGE Arabidopsis thaliana AT5G24120 N 0.768
Bo9g013770 Brassica oleracea Bo9g013770 N 0.768
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.754
Bo7g097160 Brassica oleracea Bo7g097160 N 0.710
Bra009735 Brassica rapa Bra009735 N 0.710