SIGE (Arabidopsis thaliana)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 AT5G24120 T323758_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G24120.1 Sigma 70 283 355
AT5G24120.2 Sigma 70 283 355
AT5G24120.3 Sigma 70 283 355

Links

Other Sigma 70 family TFs
Other Arabidopsis thaliana TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 1.000
Bra026466 Brassica rapa Bra026466 N 1.000
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 1.000
Bo9g013770 Brassica oleracea Bo9g013770 N 1.000
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.986
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.986
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.986
Bra009735 Brassica rapa Bra009735 N 0.943
Bo7g097160 Brassica oleracea Bo7g097160 N 0.943
PK06897.1 Cannabis sativa PK06897.1 N 0.928
MDP0000831937 Malus domestica MDP0000831937 N 0.913
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.901
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.900
POPTR_0015s02320 Populus trichocarpa POPTR_0015s02320 N 0.889
SIGE Vitis vinifera VIT_16s0050g02520 N 0.884
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.884
Cla004302 Citrullus lanatus Cla004302 N 0.884
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.884
mgf006107m Mimulus guttatus mgf006107m N 0.871
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.871
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.870
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.870
mgf001401m Mimulus guttatus mgf001401m N 0.870
Pm019782 Prunus mume Pm019782 N 0.857
Ca_03953 Cicer arietinum Ca_03953 N 0.855
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.855
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.855
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.855
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.855
30169.m006532 Ricinus communis 30169.m006532 N 0.841
TCM_015349 Theobroma cacao TCM_015349 N 0.841
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.841
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.841
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.829
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.826
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.826
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.826
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.826
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.797
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.797
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.783
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.768
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.754
Si021904m.g Setaria italica Si021904m.g N 0.725
LPERR05G23180 Leersia perrieri LPERR05G23180 N 0.725
OB05G35020 Oryza brachyantha OB05G35020 N 0.725
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.714
ONIVA05G29570 Oryza nivara ONIVA05G29570 N 0.710
BGIOSGA020460 Oryza indica BGIOSGA020460 N 0.710
OLONG_028119 Oryza longistaminata OLONG_028119 N 0.710
OMERI05G23510 Oryza meridionalis OMERI05G23510 N 0.710
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N 0.710
OPUNC05G25110 Oryza punctata OPUNC05G25110 N 0.710
ORGLA05G0239100 Oryza glaberrima ORGLA05G0239100 N 0.710
OBART05G27520 Oryza barthii OBART05G27520 N 0.710
ORUFI05G29480 Oryza rufipogon ORUFI05G29480 N 0.710