orange1.1g008352m.g (Citrus sinensis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 orange1.1g008352m.g T324222_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g008352m Sigma 70 333 403
orange1.1g008556m Sigma 70 325 395
orange1.1g008652m Sigma 70 322 392
orange1.1g009567m Sigma 70 296 366
orange1.1g011324m Sigma 70 333 403
orange1.1g011577m Sigma 70 333 403
orange1.1g011992m Sigma 70 333 383
orange1.1g014193m Sigma 70 333 403
orange1.1g014241m Sigma 70 333 402
orange1.1g017044m Sigma 70 333 362
orange1.1g018065m Sigma 70 333 361

Links

Other Sigma 70 family TFs
Other Citrus sinensis TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.746
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.824
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.824
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N 0.704
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N 0.706
mgf007606m Mimulus guttatus mgf007606m N 0.800
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.871
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.804
30078.m002307 Ricinus communis 30078.m002307 N 0.873
Pm030137 Prunus mume Pm030137 N 0.859
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.824
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.986
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.845
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.824
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.831
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.863
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.784
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.887
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.817
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.902
Cla018594 Citrullus lanatus Cla018594 N 0.887
Ca_17153 Cicer arietinum Ca_17153 N 0.761
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.746
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.793
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.789
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.789
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.746
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.824
Bra017213 Brassica rapa Bra017213 N 0.803
Bo4g186560 Brassica oleracea Bo4g186560 N 0.824
SIGF Arabidopsis thaliana AT2G36990 N 0.824
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.718
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.757
Ca_12052 Cicer arietinum Ca_12052 N 0.803
SIGF Vitis vinifera VIT_08s0040g01560 N 0.845
TCM_022198 Theobroma cacao TCM_022198 N 0.831
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.863
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.859
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.817
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.863
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.817
MTR_1g063850 Medicago truncatula MTR_1g063850 N 0.746
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.746