CGI_10027770 (Crassostrea gigas)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 CGI_10027770 T327025_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
EKC28482 Sox 176 219

Links

Other Sox family TFs
Other Crassostrea gigas TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARF8 Arabidopsis thaliana AT5G37020 D 0.000
Traes_7DL_C89614A4D Triticum aestivum Traes_7DL_C89614A4D I 0.000
Cucsa.047990 Cucumis sativus Cucsa.047990 I 0.000
Cucsa.152170 Cucumis sativus Cucsa.152170 I 0.000
mgf003543m Mimulus guttatus mgf003543m I 0.000
mgf005961m Mimulus guttatus mgf005961m I 0.000
mgf007038m Mimulus guttatus mgf007038m I 0.000
Aquca_002_01425 Aquilegia coerulea Aquca_002_01425 I 0.000
Aquca_022_00246 Aquilegia coerulea Aquca_022_00246 I 0.000
Bostr.15697s0332 Boechera stricta Bostr.15697s0332 I 0.000
Cagra.1508s0171 Capsella grandiflora Cagra.1508s0171 I 0.000
Carubv10008239m.g Capsella rubella Carubv10008239m.g I 0.000
Ciclev10011065m.g Citrus clementina Ciclev10011065m.g I 0.000
Ciclev10014198m.g Citrus clementina Ciclev10014198m.g I 0.000
Ciclev10014200m.g Citrus clementina Ciclev10014200m.g I 0.000
cassava35541.valid.m1 Manihot esculenta cassava35541.valid.m1 I 0.000
cassava32201.m1 Manihot esculenta cassava32201.m1 I 0.000
cassava30266.valid.m1 Manihot esculenta cassava30266.valid.m1 I 0.000
ARF6 Vitis vinifera VIT_10s0003g04100 I 0.000
Ca_05025 Cicer arietinum Ca_05025 I 0.000
Ca_15694 Cicer arietinum Ca_15694 I 0.000
Cla009963 Citrullus lanatus Cla009963 I 0.000
Cla019844 Citrullus lanatus Cla019844 I 0.000
Pm010467 Prunus mume Pm010467 I 0.000
Pm014818 Prunus mume Pm014818 I 0.000
29599.m000177 Ricinus communis 29599.m000177 I 0.000
29769.m000463 Ricinus communis 29769.m000463 I 0.000
cassava2408.valid.m1 Manihot esculenta cassava2408.valid.m1 I 0.000
cassava29103.valid.m1 Manihot esculenta cassava29103.valid.m1 I 0.000
cassava29104.valid.m1 Manihot esculenta cassava29104.valid.m1 I 0.000
cassava30265.valid.m1 Manihot esculenta cassava30265.valid.m1 I 0.000
Eucgr.A02065 Eucalyptus grandis Eucgr.A02065 I 0.000
evm.TU.supercontig_17.53 Carica papaya evm.TU.supercontig_17.53 I 0.000
gene22728-v1.0-hybrid Fragaria vesca gene22728-v1.0-hybrid I 0.000
MDP0000268306 Malus domestica MDP0000268306 I 0.000
MDP0000319957 Malus domestica MDP0000319957 I 0.000
orange1.1g002390m.g Citrus sinensis orange1.1g002390m.g I 0.000
orange1.1g002624m.g Citrus sinensis orange1.1g002624m.g I 0.000
orange1.1g003544m.g Citrus sinensis orange1.1g003544m.g I 0.000
SapurV1A.0030s0180 Salix purpurea SapurV1A.0030s0180 I 0.000
SapurV1A.0076s0280 Salix purpurea SapurV1A.0076s0280 I 0.000
SapurV1A.0147s0210 Salix purpurea SapurV1A.0147s0210 I 0.000
SapurV1A.0289s0180 Salix purpurea SapurV1A.0289s0180 I 0.000
SapurV1A.0355s0030 Salix purpurea SapurV1A.0355s0030 I 0.000
SapurV1A.1257s0090 Salix purpurea SapurV1A.1257s0090 I 0.000
Thhalv10006747m.g Eutrema salsugineum Thhalv10006747m.g I 0.000
PK26077.1 Cannabis sativa PK26077.1 I 0.000
MDP0000232417 Malus domestica MDP0000232417 I 0.000
MDP0000153538 Malus domestica MDP0000153538 I 0.000
Lus10033598.g Linum usitatissimum Lus10033598.g I 0.000
gene30394-v1.0-hybrid Fragaria vesca gene30394-v1.0-hybrid I 0.000
gene31631-v1.0-hybrid Fragaria vesca gene31631-v1.0-hybrid I 0.000
Gorai.006G008700 Gossypium raimondii Gorai.006G008700 I 0.000
Gorai.008G054600 Gossypium raimondii Gorai.008G054600 I 0.000
Gorai.008G097200 Gossypium raimondii Gorai.008G097200 I 0.000
Gorai.009G152700 Gossypium raimondii Gorai.009G152700 I 0.000
Gorai.011G048200 Gossypium raimondii Gorai.011G048200 I 0.000
Lus10007386.g Linum usitatissimum Lus10007386.g I 0.000
Lus10010969.g Linum usitatissimum Lus10010969.g I 0.000
Lus10017640.g Linum usitatissimum Lus10017640.g I 0.000
Lus10017641.g Linum usitatissimum Lus10017641.g I 0.000
Lus10031354.g Linum usitatissimum Lus10031354.g I 0.000
Lus10033597.g Linum usitatissimum Lus10033597.g I 0.000
PK27862.1 Cannabis sativa PK27862.1 I 0.000
Traes_7BL_66296695F Triticum aestivum Traes_7BL_66296695F I 0.000
AMTR_s00092p00072950 Amborella trichopoda AMTR_s00092p00072950 I 0.000
GLYMA08G10550 Glycine max GLYMA08G10550 I 0.000
GLYMA14G03650 Glycine max GLYMA14G03650 I 0.000
GLYMA18G05330 Glycine max GLYMA18G05330 I 0.000
GSMUA_Achr11G01610_001 Musa acuminata GSMUA_Achr11G01610_001 I 0.000
GSMUA_Achr11G25770_001 Musa acuminata GSMUA_Achr11G25770_001 I 0.000
GSMUA_Achr5G00590_001 Musa acuminata GSMUA_Achr5G00590_001 I 0.000
GSMUA_Achr6G19850_001 Musa acuminata GSMUA_Achr6G19850_001 I 0.000
GSMUA_Achr8G13630_001 Musa acuminata GSMUA_Achr8G13630_001 I 0.000
LPERR02G04280 Leersia perrieri LPERR02G04280 I 0.000
LPERR12G15750 Leersia perrieri LPERR12G15750 I 0.000
MLOC_51932 Hordeum vulgare MLOC_51932 I 0.000
MLOC_58330 Hordeum vulgare MLOC_58330 I 0.000
MTR_5g076270 Medicago truncatula MTR_5g076270 I 0.000
GLYMA05G27580 Glycine max GLYMA05G27580 I 0.000
GLYMA02G45100 Glycine max GLYMA02G45100 I 0.000
ARF8 Arabidopsis lyrata fgenesh2_kg.7__3131__AT5G37020.1 I 0.000
ARF6 Arabidopsis thaliana AT1G30330 I 0.000
ARF6 Oryza indica BGIOSGA007604 I 0.000
BGIOSGA035840 Oryza indica BGIOSGA035840 I 0.000
Bo3g148950 Brassica oleracea Bo3g148950 I 0.000
Bo4g136370 Brassica oleracea Bo4g136370 I 0.000
Bo5g062810 Brassica oleracea Bo5g062810 I 0.000
Bo6g099440 Brassica oleracea Bo6g099440 I 0.000
Bra004125 Brassica rapa Bra004125 I 0.000
Bra010776 Brassica rapa Bra010776 I 0.000
Bra028110 Brassica rapa Bra028110 I 0.000
BRADI4G01730 Brachypodium distachyon BRADI4G01730 I 0.000
BRADI5G25767 Brachypodium distachyon BRADI5G25767 I 0.000
ARF6 Arabidopsis lyrata fgenesh2_kg.1__3210__AT1G30330.2 I 0.000
OB12G25550 Oryza brachyantha OB12G25550 I 0.000
OBART02G04960 Oryza barthii OBART02G04960 I 0.000
OBART12G18720 Oryza barthii OBART12G18720 I 0.000
PGSC0003DMG401018664 Solanum tuberosum PGSC0003DMG401018664 I 0.000
POPTR_0001s36900 Populus trichocarpa POPTR_0001s36900 I 0.000
POPTR_0011s09450 Populus trichocarpa POPTR_0011s09450 I 0.000
POPTR_0017s01870 Populus trichocarpa POPTR_0017s01870 I 0.000
PRUPE_ppa001069mg Prunus persica PRUPE_ppa001069mg I 0.000
PRUPE_ppa001179mg Prunus persica PRUPE_ppa001179mg I 0.000
Sb10g027220 Sorghum bicolor Sb10g027220 I 0.000
Solyc02g037530.2 Solanum lycopersicum Solyc02g037530.2 I 0.000
TCM_001906 Theobroma cacao TCM_001906 I 0.000
TCM_017488 Theobroma cacao TCM_017488 I 0.000
TCM_029410 Theobroma cacao TCM_029410 I 0.000
Traes_2AL_A7941CB12 Triticum aestivum Traes_2AL_A7941CB12 I 0.000
Traes_2DL_8434C0251 Triticum aestivum Traes_2DL_8434C0251 I 0.000
ARF25 Oryza sativa OS12G0613700 I 0.000
ARF6 Oryza sativa OS02G0164900 I 0.000
ORUFI12G20920 Oryza rufipogon ORUFI12G20920 I 0.000
OGLUM02G04770 Oryza glumaepatula OGLUM02G04770 I 0.000
OGLUM12G20370 Oryza glumaepatula OGLUM12G20370 I 0.000
OLONG_020465 Oryza longistaminata OLONG_020465 I 0.000
OLONG_025769 Oryza longistaminata OLONG_025769 I 0.000
OMERI02G05780 Oryza meridionalis OMERI02G05780 I 0.000
OMERI12G13970 Oryza meridionalis OMERI12G13970 I 0.000
ONIVA02G05150 Oryza nivara ONIVA02G05150 I 0.000
ONIVA12G17670 Oryza nivara ONIVA12G17670 I 0.000
OPUNC02G04120 Oryza punctata OPUNC02G04120 I 0.000
OPUNC12G16920 Oryza punctata OPUNC12G16920 I 0.000
ORGLA02G0045800 Oryza glaberrima ORGLA02G0045800 I 0.000
ORGLA12G0159700 Oryza glaberrima ORGLA12G0159700 I 0.000
ORUFI02G05060 Oryza rufipogon ORUFI02G05060 I 0.000
Traes_7AL_1415D04BF Triticum aestivum Traes_7AL_1415D04BF I 0.000