ssrp1a (Danio rerio)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSDARG00000037397 T327851_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable histone binding activity and nucleosome binding activity. Acts upstream of or within regulation of cell cycle. Predicted to be located in chromosome and nucleus. Predicted to be part of FACT complex. Is expressed in eye; liver; and pectoral fin. Orthologous to human SSRP1 (structure specific recognition protein 1). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02819
M02490_2.00 		Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN		 PBM
Weirauch et al.(2014)
pTH9672 		0.427 0.435
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000114529 Sox 546 614

Links

Other Sox family TFs
Other Danio rerio TFs

Invalid Input OrderBy

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action