ssrp1a (Danio rerio)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSDARG00000037397 T327851_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02819
M02490_2.00 		Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN		 PBM
Weirauch et al.(2014)
pTH9672 		0.427 0.435
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000114529 Sox 546 614

Links

Other Sox family TFs
Other Danio rerio TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000014826 Astyanax mexicanus ENSAMXG00000014826 N 0.680
CGI_10024258 Crassostrea gigas CGI_10024258 N 0.578
ENSCSAVG00000011755 Ciona savignyi ENSCSAVG00000011755 N 0.574
LotgiG207546 Lottia gigantea LotgiG207546 N 0.562
NEMVEDRAFT_v1g59568 Nematostella vectensis NEMVEDRAFT_v1g59568 N 0.535
BGLB002303 Biomphalaria glabrata BGLB002303 N 0.518
AATE003884 Anopheles atroparvus AATE003884 N 0.515
ASIS014507 Anopheles sinensis ASIS014507 N 0.515
Aqu1.209664 Amphimedon queenslandica Aqu1.209664 N 0.508
Sakowv30021656m.g Saccoglossus kowalevskii Sakowv30021656m.g N 0.500
CLEC003860 Cimex lectularius CLEC003860 I 0.498
ACEP16595 Atta cephalotes ACEP16595 I 0.494
ADIR000496 Anopheles dirus ADIR000496 N 0.485
AFAF013045 Anopheles farauti AFAF013045 N 0.485
Ocbimv22006454m.g Octopus bimaculoides Ocbimv22006454m.g N 0.484
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I 0.474
HNAJ_0000793101 Hymenolepis nana HNAJ_0000793101 I 0.473
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N 0.466
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N 0.466
GH20784 Drosophila grimshawi FBgn0128247 I 0.465
BGIBMGA005289 Bombyx mori BGIBMGA005289 I 0.465
GJ20604 Drosophila virilis FBgn0207743 I 0.465
GI20867 Drosophila mojavensis FBgn0143601 I 0.465
PPAI002522 Phlebotomus papatasi PPAI002522 I 0.463
GK15658 Drosophila willistoni FBgn0217663 I 0.461
GD25171 Drosophila simulans FBgn0196483 I 0.461
GG20749 Drosophila erecta FBgn0112936 I 0.461
HmgZ Drosophila melanogaster FBgn0010228 I 0.461
GF11622 Drosophila ananassae FBgn0088662 I 0.461
GM15692 Drosophila sechellia FBgn0170608 I 0.461
HmgZ Drosophila yakuba FBgn0068145 I 0.461
MDOA014797 Musca domestica MDOA014797 I 0.459
RPRC006380 Rhodnius prolixus RPRC006380 I 0.458
SapurV1A.3543s0020 Salix purpurea SapurV1A.3543s0020 N 0.457
KGM_13852 Danaus plexippus KGM_13852 I 0.457
CBN25379 Caenorhabditis brenneri CBN25379 I 0.457
GA14726 Drosophila pseudoobscura FBgn0074753 I 0.457
GL17523 Drosophila persimilis FBgn0155126 I 0.457
NBR_0001132501 Nippostrongylus brasiliensis NBR_0001132501 N 0.456
ANCDUO_11855 Ancylostoma duodenale ANCDUO_11855 N 0.456
ANCCEY_10464 Ancylostoma ceylanicum ANCCEY_10464 N 0.456
ANCCAN_21637 Ancylostoma caninum ANCCAN_21637 N 0.456
HCOI00417600 Haemonchus contortus HCOI00417600 N 0.456
HPBE_0002310801 Heligmosomoides bakeri HPBE_0002310801 N 0.456
HPLM_0000803901 Haemonchus placei HPLM_0000803901 N 0.456
nLs.2.1.2.g02941 Litomosoides sigmodontis nLs.2.1.2.g02941 N 0.456
SVUK_0001398701 Strongylus vulgaris SVUK_0001398701 N 0.456
nDi.2.2.2.g04713 Dirofilaria immitis nDi.2.2.2.g04713 N 0.456
TELCIR_05217 Teladorsagia circumcincta TELCIR_05217 N 0.456
TELCIR_22690 Teladorsagia circumcincta TELCIR_22690 N 0.456
DICVIV_01337 Dictyocaulus viviparus DICVIV_01337 N 0.456
NECAME_10840 Necator americanus NECAME_10840 N 0.456
MCINX001064 Melitaea cinxia MCINX001064 I 0.452
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.451
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.451
scaffold164-EXSNAP2012.19 Pristionchus exspectatus scaffold164-EXSNAP2012.19 N 0.450
SMUV_0000358401 Syphacia muris SMUV_0000358401 N 0.450
PPA02261 Pristionchus pacificus PPA02261 N 0.450
ASTEI02374 Anopheles stephensi ASTEI02374 N 0.447
AMIN009362 Anopheles minimus AMIN009362 N 0.447
AMAM004579 Anopheles maculatus AMAM004579 N 0.447
AFUN009600 Anopheles funestus AFUN009600 N 0.447
LCUP005047 Lucilia cuprina LCUP005047 N 0.446
Bm6643 Brugia malayi Bm6643 N 0.446
DAPPUDRAFT_201206 Daphnia pulex DAPPUDRAFT_201206 N 0.436
AEPI002536 Anopheles epiroticus AEPI002536 N 0.434
ADAC005115 Anopheles darlingi ADAC005115 N 0.433
TC012866 Tribolium castaneum TC012866 N 0.433
AALB010796 Anopheles albimanus AALB010796 N 0.433
CapteG172235 Capitella teleta CapteG172235 I 0.431
ENSXMAG00000000362 Xiphophorus maculatus ENSXMAG00000000362 I 0.428
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.427
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.427
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.427
NCU02819 Neurospora crassa NCU02819 D 0.427
Ocbimv22012197m.g Octopus bimaculoides Ocbimv22012197m.g I 0.426
MDOA009531 Musca domestica MDOA009531 N 0.426
ISCW020032 Ixodes scapularis ISCW020032 N 0.425
ACEP19638 Atta cephalotes ACEP19638 I 0.424
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.422
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.422
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.422
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N 0.421
Gorai.006G024900 Gossypium raimondii Gorai.006G024900 I 0.419
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I 0.419
AGAP012335 Anopheles gambiae AGAP012335 N 0.418
AQUA002991 Anopheles quadriannulatus AQUA002991 N 0.418
AMEC001570 Anopheles melas AMEC001570 N 0.418
ACOM026234 Anopheles coluzzii ACOM026234 N 0.418
AARA003414 Anopheles arabiensis AARA003414 N 0.418
PODANS_1_7390 Podospora anserina PODANS_1_7390 I 0.415
TriadG64155 Trichoplax adhaerens TriadG64155 I 0.415