Gorai.006G024900 (Gossypium raimondii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Gorai.006G024900 T334539_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02819
M02490_2.00 		Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN		 PBM
Weirauch et al.(2014)
pTH9672 		0.436 0.435
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G024900.1 Sox 578 646
Gorai.006G024900.2 Sox 555 623
Gorai.006G024900.4 Sox 438 506

Links

Other Sox family TFs
Other Gossypium raimondii TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA01G33240 Glycine max GLYMA01G33240 I 0.621
mgf024995m Mimulus guttatus mgf024995m I 0.555
Cla017295 Citrullus lanatus Cla017295 I 0.549
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.549
Ca_12487 Cicer arietinum Ca_12487 I 0.545
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.545
Ca_10804 Cicer arietinum Ca_10804 I 0.545
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.545
PK18077.1 Cannabis sativa PK18077.1 I 0.543
mgf001267m Mimulus guttatus mgf001267m I 0.523
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.519
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.519
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.512
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.512
MTR_5g082570 Medicago truncatula MTR_5g082570 I 0.512
MDP0000301546 Malus domestica MDP0000301546 I 0.508
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.507
TCM_018380 Theobroma cacao TCM_018380 I 0.507
Pm015842 Prunus mume Pm015842 I 0.507
Eucgr.I01920 Eucalyptus grandis Eucgr.I01920 N 0.503
MDP0000828844 Malus domestica MDP0000828844 I 0.501
MDP0000310093 Malus domestica MDP0000310093 I 0.496
GLYMA13G05140 Glycine max GLYMA13G05140 I 0.481
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.481
Ciclev10011266m.g Citrus clementina Ciclev10011266m.g I 0.479
orange1.1g006512m.g Citrus sinensis orange1.1g006512m.g I 0.479
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.478
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.478
ATHMG Vitis vinifera VIT_14s0108g00040 I 0.478
SSRP1 Arabidopsis thaliana AT3G28730 I 0.477
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.477
GLYMA03G03771 Glycine max GLYMA03G03771 N 0.477
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.477
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.472
POPTR_0004s12290 Populus trichocarpa POPTR_0004s12290 I 0.471
Gorai.007G078500 Gossypium raimondii Gorai.007G078500 N 0.467
SOCG_02294 Schizosaccharomyces octosporus SOCG_02294 I 0.466
SPOG_00531 Schizosaccharomyces cryophilus SPOG_00531 I 0.464
BATDEDRAFT_89692 Batrachochytrium dendrobatidis BATDEDRAFT_89692 I 0.462
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.460
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.460
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.460
OIDMADRAFT_143526 Oidiodendron maius OIDMADRAFT_143526 I 0.457
SS1G_04584 Sclerotinia sclerotiorum SS1G_04584 I 0.457
SBOR_0403 Sclerotinia borealis SBOR_0403 I 0.457
MBM_02410 Marssonina brunnea MBM_02410 I 0.457
gw1.199.74.1 Physcomitrella patens gw1.199.74.1 I 0.456
SJAG_03603 Schizosaccharomyces japonicus SJAG_03603 I 0.452
M7I_1578 Glarea lozoyensis M7I_1578 I 0.450
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.447
POPTR_0017s11460 Populus trichocarpa POPTR_0017s11460 I 0.446
29822.m003476 Ricinus communis 29822.m003476 I 0.445
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.445
TPHA_0A03740 Tetrapisispora phaffii TPHA_0A03740 I 0.444
Kpol_1065p34 Vanderwaltozyma polyspora Kpol_1065p34 I 0.444
hmgb2a Danio rerio ENSDARG00000029722 N 0.443
D918_05288 Trichuris suis D918_05288 N 0.439
TMUE_s0089001400 Trichuris muris TMUE_s0089001400 N 0.439
SapurV1A.0447s0140 Salix purpurea SapurV1A.0447s0140 I 0.439
MYCTH_2294934 Myceliophthora thermophila MYCTH_2294934 I 0.438
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.436
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.436
NCU02819 Neurospora crassa NCU02819 D 0.436
Bra033055 Brassica rapa Bra033055 N 0.436
CPUR_04901 Claviceps purpurea CPUR_04901 I 0.436
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.436
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.436
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.436
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.436
TPHA_0M01480 Tetrapisispora phaffii TPHA_0M01480 I 0.434
RO3G_07751 Rhizopus oryzae RO3G_07751 I 0.432
SELMODRAFT_166865 Selaginella moellendorffii SELMODRAFT_166865 I 0.431
SELMODRAFT_159743 Selaginella moellendorffii SELMODRAFT_159743 I 0.431
THITE_2121767 Thielavia terrestris THITE_2121767 I 0.431
L596_g21045 Steinernema carpocapsae L596_g21045 I 0.430
DRE_02237 Drechslerella stenobrocha DRE_02237 N 0.428
YALI0_C11671g Yarrowia lipolytica YALI0_C11671g I 0.428
nhp6 Dictyostelium discoideum DDB_G0270260 N 0.427
CNF04730 Cryptococcus neoformans CNF04730 I 0.426
nhp6 Schizosaccharomyces pombe SPAC57A10.09c I 0.426
L804_02852 Cryptococcus gattii L804_02852 I 0.426
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I 0.425
EFA82179.1 Polysphondylium pallidum EFA82179.1 I 0.425
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I 0.425
fgeneshDP_kg.C_scaffold_625000001 Dictyostelium purpureum fgeneshDP_kg.C_scaffold_625000001 I 0.425
Bcin01g08840 Botrytis cinerea Bcin01g08840 I 0.425
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I 0.425
estExt_fgeneshPB_pg.C_360007 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_360007 I 0.425
L892_g13433 Steinernema scapterisci L892_g13433 I 0.424
EV44_g2383 Erysiphe necator EV44_g2383 I 0.424
MELLADRAFT_31192 Melampsora laricipopulina MELLADRAFT_31192 I 0.423
DICSQDRAFT_109066 Dichomitus squalens DICSQDRAFT_109066 I 0.422
EFV62220 Trichinella spiralis EFV62220 N 0.422
NDAI_0A05290 Naumovozyma dairenensis NDAI_0A05290 I 0.422
HMPREF1541_06859 Cyphellophora europaea HMPREF1541_06859 I 0.421
ENSOANG00000000353 Ornithorhynchus anatinus ENSOANG00000000353 N 0.421
PODANS_1_7390 Podospora anserina PODANS_1_7390 I 0.421
TCM_014800 Theobroma cacao TCM_014800 N 0.420
ENSXMAG00000000362 Xiphophorus maculatus ENSXMAG00000000362 I 0.420
Ocbimv22012197m.g Octopus bimaculoides Ocbimv22012197m.g I 0.420
mgf006762m Mimulus guttatus mgf006762m N 0.420
fgeneshDP_kg.C_scaffold_93000006 Dictyostelium purpureum fgeneshDP_kg.C_scaffold_93000006 I 0.419
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.419
ssrp1a Danio rerio ENSDARG00000037397 I 0.419
GNLVRS01_PISO0N04523g Millerozyma farinosa GNLVRS01_PISO0N04523g I 0.419
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.419
CPAG_02417 Candida parapsilosis CPAG_02417 I 0.419
CORT_0E02670 Candida orthopsilosis CORT_0E02670 I 0.419
Kpol_376p1 Vanderwaltozyma polyspora Kpol_376p1 I 0.418
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.418
fgenesh1_pg.C_scaffold_9000255 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_9000255 I 0.416
ENSMMUG00000031258 Macaca mulatta ENSMMUG00000031258 I 0.416
ACEP19638 Atta cephalotes ACEP19638 I 0.416
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.415
A1O1_01197 Capronia coronata A1O1_01197 I 0.415
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.415
PV11_09703 Exophiala sideris PV11_09703 I 0.415
G647_10093 Cladophialophora carrionii G647_10093 I 0.415
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.415
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.415
A1O3_08778 Capronia epimyces A1O3_08778 I 0.415
PV06_04154 Exophiala oligosperma PV06_04154 I 0.415