Bra033055 (Brassica rapa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bra033055 T326717_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra033055.1-P Sox 539 607

Links

Other Sox family TFs
Other Brassica rapa TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.623
29822.m003476 Ricinus communis 29822.m003476 I 0.615
Bo7g091510 Brassica oleracea Bo7g091510 N 0.608
Bra025350 Brassica rapa Bra025350 N 0.608
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.590
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.579
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.563
Cla017295 Citrullus lanatus Cla017295 I 0.563
MDP0000828844 Malus domestica MDP0000828844 I 0.562
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.560
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.560
Pm015842 Prunus mume Pm015842 I 0.560
SSRP1 Arabidopsis thaliana AT3G28730 I 0.560
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.560
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.560
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.557
Ca_12487 Cicer arietinum Ca_12487 I 0.556
PK18077.1 Cannabis sativa PK18077.1 I 0.556
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.556
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.556
Ca_10804 Cicer arietinum Ca_10804 I 0.553
TCM_018380 Theobroma cacao TCM_018380 I 0.551
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.536
MDP0000310093 Malus domestica MDP0000310093 I 0.535
estExt_Genewise1.C_510099 Volvox carteri estExt_Genewise1.C_510099 N 0.534
orange1.1g006512m.g Citrus sinensis orange1.1g006512m.g I 0.533
Ciclev10011266m.g Citrus clementina Ciclev10011266m.g I 0.533
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.532
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.532
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.532
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.529
estExt_Genewise1.C_10428 Volvox carteri estExt_Genewise1.C_10428 N 0.524
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.523
Aquca_002_00505 Aquilegia coerulea Aquca_002_00505 I 0.522
GLYMA03G03771 Glycine max GLYMA03G03771 N 0.520
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.520
ATHMG Vitis vinifera VIT_14s0108g00040 I 0.510
mgf001267m Mimulus guttatus mgf001267m I 0.508
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.499
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.499
BOTBODRAFT_30512 Botryobasidium botryosum BOTBODRAFT_30512 N 0.493
CHLREDRAFT_142283 Chlamydomonas reinhardtii CHLREDRAFT_142283 N 0.491
O9G_002262 Rozella allomycis O9G_002262 I 0.484
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.482
BATDEDRAFT_89692 Batrachochytrium dendrobatidis BATDEDRAFT_89692 I 0.482
mgf024995m Mimulus guttatus mgf024995m I 0.479
gw1.32.10.1 Bigelowiella natans gw1.32.10.1 N 0.476
MDP0000301546 Malus domestica MDP0000301546 I 0.474
GLYMA13G05140 Glycine max GLYMA13G05140 I 0.463
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.460
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.460
Eucgr.I01920 Eucalyptus grandis Eucgr.I01920 N 0.455
GLYMA01G33240 Glycine max GLYMA01G33240 I 0.452
17746 Aureococcus anophagefferens 17746 I 0.445
BN946_scf184999.g62 Trametes cinnabarina BN946_scf184999.g62 I 0.442
gw1.204.1.1 Dictyostelium purpureum gw1.204.1.1 I 0.442
gw1.199.74.1 Physcomitrella patens gw1.199.74.1 I 0.441
K437DRAFT_218621 Tilletiaria anomala K437DRAFT_218621 N 0.439
estExt_fgeneshDP_kg.C_1050006 Dictyostelium purpureum estExt_fgeneshDP_kg.C_1050006 I 0.438
SJAG_03603 Schizosaccharomyces japonicus SJAG_03603 I 0.438
Gorai.006G024900 Gossypium raimondii Gorai.006G024900 I 0.436
Lus10042065.g Linum usitatissimum Lus10042065.g N 0.435
Lus10018073.g Linum usitatissimum Lus10018073.g N 0.435
SOCG_02294 Schizosaccharomyces octosporus SOCG_02294 I 0.435
YALI0_C11671g Yarrowia lipolytica YALI0_C11671g I 0.434
SPOG_00531 Schizosaccharomyces cryophilus SPOG_00531 I 0.433
CHLREDRAFT_189879 Chlamydomonas reinhardtii CHLREDRAFT_189879 N 0.433
PLICRDRAFT_46399 Plicaturopsis crispa PLICRDRAFT_46399 I 0.431
EFA82179.1 Polysphondylium pallidum EFA82179.1 I 0.426
fgeneshDP_kg.C_scaffold_625000001 Dictyostelium purpureum fgeneshDP_kg.C_scaffold_625000001 I 0.426
MVLG_07162 Microbotryum violaceum MVLG_07162 I 0.425
M407DRAFT_81488 Tulasnella calospora M407DRAFT_81488 I 0.425
CC1G_11882 Coprinopsis cinerea CC1G_11882 I 0.423
HPODL_03671 Ogataea parapolymorpha HPODL_03671 I 0.421
NDAI_0A05290 Naumovozyma dairenensis NDAI_0A05290 I 0.419