CHLREDRAFT_142283 (Chlamydomonas reinhardtii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 CHLREDRAFT_142283 T327052_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
EDP08296 Sox 61 129

Links

Other Sox family TFs
Other Chlamydomonas reinhardtii TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_Genewise1.C_10428 Volvox carteri estExt_Genewise1.C_10428 N 0.637
estExt_Genewise1.C_510099 Volvox carteri estExt_Genewise1.C_510099 N 0.613
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.548
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.548
29822.m003476 Ricinus communis 29822.m003476 I 0.534
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.534
BOTBODRAFT_30512 Botryobasidium botryosum BOTBODRAFT_30512 N 0.506
Bra033055 Brassica rapa Bra033055 N 0.491
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.481
Aquca_002_00505 Aquilegia coerulea Aquca_002_00505 I 0.479
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.474
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.474
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.474
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.474
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.465
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.461
Pm015842 Prunus mume Pm015842 I 0.461
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.461
TCM_018380 Theobroma cacao TCM_018380 I 0.461
MDP0000828844 Malus domestica MDP0000828844 I 0.460
CHLREDRAFT_189879 Chlamydomonas reinhardtii CHLREDRAFT_189879 N 0.458
GUITHDRAFT_76406 Guillardia theta GUITHDRAFT_76406 N 0.457
GUITHDRAFT_114564 Guillardia theta GUITHDRAFT_114564 N 0.457
M407DRAFT_81488 Tulasnella calospora M407DRAFT_81488 I 0.456
MDP0000310093 Malus domestica MDP0000310093 I 0.455
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.454
OSTLU_19125 Ostreococcus lucimarinus OSTLU_19125 N 0.452
gw.283.36.1 Branchiostoma floridae gw.283.36.1 N 0.447
gw.77.73.1 Branchiostoma floridae gw.77.73.1 N 0.447
Lus10018073.g Linum usitatissimum Lus10018073.g N 0.445
Lus10042065.g Linum usitatissimum Lus10042065.g N 0.445
O9G_002262 Rozella allomycis O9G_002262 I 0.444
MDP0000301546 Malus domestica MDP0000301546 I 0.441
GUITHDRAFT_115609 Guillardia theta GUITHDRAFT_115609 N 0.439
K437DRAFT_218621 Tilletiaria anomala K437DRAFT_218621 N 0.436
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.433
OB01G34910 Oryza brachyantha OB01G34910 I 0.431
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.431
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.431
gw1.32.10.1 Bigelowiella natans gw1.32.10.1 N 0.429
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.427
HelroG177154 Helobdella robusta HelroG177154 N 0.426
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.426
PK18077.1 Cannabis sativa PK18077.1 I 0.425
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.425
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.425
SSRP1 Arabidopsis thaliana AT3G28730 I 0.425
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.420
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.420
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.420
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.417
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.417
Ca_12487 Cicer arietinum Ca_12487 I 0.417
Ca_10804 Cicer arietinum Ca_10804 I 0.417
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.416
GLYMA03G03771 Glycine max GLYMA03G03771 N 0.416