POPTR_0004s12290 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0004s12290 T332124_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.434 0.478
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.434 0.478
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.434 0.449
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.434 0.449
NCU02819
M02490_2.00 		Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN		 PBM
Weirauch et al.(2014)
pTH9672 		0.431 0.406
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s12290.1 Sox 559 627

Links

Other Sox family TFs
Other Populus trichocarpa TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0017s11460 Populus trichocarpa POPTR_0017s11460 I 0.632
SapurV1A.0447s0140 Salix purpurea SapurV1A.0447s0140 I 0.625
NDAI_0A05290 Naumovozyma dairenensis NDAI_0A05290 I 0.478
Pm015842 Prunus mume Pm015842 I 0.476
TCM_018380 Theobroma cacao TCM_018380 I 0.476
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.476
PK18077.1 Cannabis sativa PK18077.1 I 0.474
KNAG_0H00800 Kazachstania naganishii KNAG_0H00800 I 0.472
Gorai.006G024900 Gossypium raimondii Gorai.006G024900 I 0.471
Cla017295 Citrullus lanatus Cla017295 I 0.468
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.468
MDP0000310093 Malus domestica MDP0000310093 I 0.466
MDP0000828844 Malus domestica MDP0000828844 I 0.466
SS1G_04584 Sclerotinia sclerotiorum SS1G_04584 I 0.465
SBOR_0403 Sclerotinia borealis SBOR_0403 I 0.465
OIDMADRAFT_143526 Oidiodendron maius OIDMADRAFT_143526 I 0.465
MBM_02410 Marssonina brunnea MBM_02410 I 0.465
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.461
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.461
Kpol_1065p34 Vanderwaltozyma polyspora Kpol_1065p34 I 0.459
NCAS_0A11010 Naumovozyma castellii NCAS_0A11010 I 0.459
Scas_Contig667.17 Saccharomyces castellii Scas_Contig667.17 I 0.459
TPHA_0A03740 Tetrapisispora phaffii TPHA_0A03740 I 0.459
M7I_1578 Glarea lozoyensis M7I_1578 I 0.458
PHSY_006278 Pseudozyma hubeiensis PHSY_006278 I 0.457
DICSQDRAFT_109066 Dichomitus squalens DICSQDRAFT_109066 I 0.455
Ca_12487 Cicer arietinum Ca_12487 I 0.454
Ca_10804 Cicer arietinum Ca_10804 I 0.454
TPHA_0M01480 Tetrapisispora phaffii TPHA_0M01480 I 0.452
CAGL0H08541g Candida glabrata CAGL0H08541g I 0.452
KAFR_0G01620 Kazachstania africana KAFR_0G01620 I 0.452
SINV20852 Solenopsis invicta SINV20852 N 0.451
KUCA_T00001555001 Kuraishia capsulata KUCA_T00001555001 I 0.451
ACEP22292 Atta cephalotes ACEP22292 N 0.451
Cflo_07151--XP_625193.1_APIME Camponotus floridanus Cflo_07151--XP_625193.1_APIME N 0.451
HPODL_03671 Ogataea parapolymorpha HPODL_03671 I 0.451
mgf001267m Mimulus guttatus mgf001267m I 0.450
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.449
CPUR_04901 Claviceps purpurea CPUR_04901 I 0.449
YALI0_C11671g Yarrowia lipolytica YALI0_C11671g I 0.448
FOMPIDRAFT_1026139 Fomitopsis pinicola FOMPIDRAFT_1026139 I 0.448
estExt_Genewise1.C_20300 Phycomyces blakesleeanus estExt_Genewise1.C_20300 I 0.447
RO3G_07751 Rhizopus oryzae RO3G_07751 I 0.445
MDP0000301546 Malus domestica MDP0000301546 I 0.445
estExt_Genewise1Plus.C_11422 Mucor circinelloides estExt_Genewise1Plus.C_11422 I 0.445
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.443
CNF04730 Cryptococcus neoformans CNF04730 I 0.442
L804_02852 Cryptococcus gattii L804_02852 I 0.442
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I 0.441
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I 0.441
TBLA_0I02240 Tetrapisispora blattae TBLA_0I02240 I 0.441
NV11068 Nasonia vitripennis NV11068 I 0.441
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I 0.441
fgenesh1_pg.C_scaffold_9000255 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_9000255 I 0.440
THITE_2121767 Thielavia terrestris THITE_2121767 I 0.440
MELLADRAFT_31192 Melampsora laricipopulina MELLADRAFT_31192 I 0.440
PODANS_1_7390 Podospora anserina PODANS_1_7390 I 0.440
PSEUBRA_SCAF4g05002 Pseudozyma brasiliensis PSEUBRA_SCAF4g05002 I 0.439
UM02364 Ustilago maydis UM02364 I 0.439
CORT_0E02670 Candida orthopsilosis CORT_0E02670 I 0.439
MSY001_2636 Malassezia sympodialis MSY001_2636 I 0.439
PaG_04789 Pseudozyma aphidis PaG_04789 I 0.439
PAN0_004d2231 Pseudozyma antarctica PAN0_004d2231 I 0.439
GNLVRS01_PISO0N04523g Millerozyma farinosa GNLVRS01_PISO0N04523g I 0.439
estExt_fgeneshPB_pg.C_360007 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_360007 I 0.439
CPAG_02417 Candida parapsilosis CPAG_02417 I 0.439
PV06_04154 Exophiala oligosperma PV06_04154 I 0.438
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.438
PV11_09703 Exophiala sideris PV11_09703 I 0.438
MYCTH_2294934 Myceliophthora thermophila MYCTH_2294934 I 0.438
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.438
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.438
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.438
PHLGIDRAFT_113118 Phlebiopsis gigantea PHLGIDRAFT_113118 I 0.438
A1O3_08778 Capronia epimyces A1O3_08778 I 0.438
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.438
A1O1_01197 Capronia coronata A1O1_01197 I 0.438
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.438
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.438
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.438
G647_10093 Cladophialophora carrionii G647_10093 I 0.438
PLEOSDRAFT_1048718 Pleurotus ostreatus PLEOSDRAFT_1048718 I 0.436
GALMADRAFT_227783 Galerina marginata GALMADRAFT_227783 I 0.436
KLLA0_B12056g Kluyveromyces lactis KLLA0_B12056g I 0.434
Kpol_376p1 Vanderwaltozyma polyspora Kpol_376p1 I 0.434
TDEL_0C04750 Torulaspora delbrueckii TDEL_0C04750 I 0.434
KLTH0E14850g Lachancea thermotolerans KLTH0E14850g I 0.434
NHP6A Saccharomyces cerevisiae YPR052C D 0.434
SKUD_180604 Saccharomyces kudriavzevii SKUD_180604 I 0.434
SKUD_201106 Saccharomyces kudriavzevii SKUD_201106 I 0.434
NHP6B Saccharomyces cerevisiae YBR089C-A D 0.434
ZBAI_00368 Zygosaccharomyces bailii ZBAI_00368 I 0.434
SU7_3651 Saccharomyces arboricola SU7_3651 I 0.434
SU7_0186 Saccharomyces arboricola SU7_0186 I 0.434
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.434
LALA0_S09e03686g Lachancea lanzarotensis LALA0_S09e03686g I 0.434
CANTEDRAFT_110112 Candida tenuis CANTEDRAFT_110112 I 0.434
ZBAI_05520 Zygosaccharomyces bailii ZBAI_05520 I 0.434
29822.m003476 Ricinus communis 29822.m003476 I 0.434
KLTH0E14850g Kluyveromyces thermotolerans KLTH0E14850g I 0.434
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.434
Kwal_12539 Kluyveromyces waltii Kwal_12539 I 0.434
SAKL0B07150g Lachancea kluyveri SAKL0B07150g I 0.434
906_YBR089C-A Saccharomyces mikatae 906_YBR089C-A I 0.434
25751_YPR052C Saccharomyces bayanus 25751_YPR052C I 0.434
ZYRO0C15752g Zygosaccharomyces rouxii ZYRO0C15752g I 0.434
1377_YBR089C-A Saccharomyces paradoxus 1377_YBR089C-A I 0.434
2032_YBR089C-A Saccharomyces bayanus 2032_YBR089C-A I 0.434
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.434
22477_YPR052C Saccharomyces mikatae 22477_YPR052C I 0.434
Bcin01g08840 Botrytis cinerea Bcin01g08840 I 0.433
G210_1137 Candida maltosa G210_1137 I 0.432
CD36_41610 Candida dubliniensis CD36_41610 I 0.432
gww1.1.1.1342.1 Pichia stipitis gww1.1.1.1342.1 I 0.432
EV44_g2383 Erysiphe necator EV44_g2383 I 0.432
DEHA2D17710g Debaryomyces hansenii DEHA2D17710g I 0.432
DOTSEDRAFT_74007 Dothistroma septosporum DOTSEDRAFT_74007 I 0.432
VDBG_04589 Verticillium alfalfae VDBG_04589 I 0.432
VDAG_09161 Verticillium dahliae VDAG_09161 I 0.432
VDAG_04140 Verticillium dahliae VDAG_04140 I 0.432
GLYMA01G33240 Glycine max GLYMA01G33240 I 0.432
LELG_04337 Lodderomyces elongisporus LELG_04337 I 0.432
GNLVRS01_PISO0M04390g Millerozyma farinosa GNLVRS01_PISO0M04390g I 0.432
SPAPADRAFT_62621 Spathaspora passalidarum SPAPADRAFT_62621 I 0.432
VDBG_04589 Verticillium albo atrum VDBG_04589 I 0.432
PV08_04655 Exophiala spinifera PV08_04655 I 0.432
PV09_01265 Verruconis gallopava PV09_01265 I 0.432
PICST_23779 Scheffersomyces stipitis PICST_23779 I 0.432
M438DRAFT_311243 Aureobasidium pullulans M438DRAFT_311243 I 0.431
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.431
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.431
ACRE_011600 Acremonium chrysogenum ACRE_011600 I 0.431
M437DRAFT_40541 Aureobasidium melanogenum M437DRAFT_40541 I 0.431
NCU02819 Neurospora crassa NCU02819 D 0.431
sr13567 Sporisorium reilianum sr13567 I 0.431
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.431
Ciclev10011266m.g Citrus clementina Ciclev10011266m.g I 0.428
ANIA_02885 Aspergillus nidulans CADANIAG00010204 I 0.428
MTR_5g082570 Medicago truncatula MTR_5g082570 I 0.428
NCAS_0I01260 Naumovozyma castellii NCAS_0I01260 I 0.428
Scas_Contig718.17 Saccharomyces castellii Scas_Contig718.17 I 0.428
orange1.1g006512m.g Citrus sinensis orange1.1g006512m.g I 0.428
BN946_scf184999.g62 Trametes cinnabarina BN946_scf184999.g62 I 0.427
Eucgr.I01920 Eucalyptus grandis Eucgr.I01920 N 0.427
FIBRA_06299 Fibroporia radiculosa FIBRA_06299 I 0.427
e_gw1.1.2450.1 Mucor circinelloides e_gw1.1.2450.1 I 0.427
CERSUDRAFT_85760 Ceriporiopsis subvermispora CERSUDRAFT_85760 I 0.427
MYCFIDRAFT_57980 Pseudocercospora fijiensis MYCFIDRAFT_57980 I 0.426
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.426
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.426
SSRP1 Arabidopsis thaliana AT3G28730 I 0.426
Mycgr3G90433 Zymoseptoria tritici Mycgr3G90433 I 0.426
fgenesh1_pg.C_chr_2000123 Mycosphaerella graminicola fgenesh1_pg.C_chr_2000123 I 0.426
SEPMUDRAFT_150255 Sphaerulina musiva SEPMUDRAFT_150255 I 0.426
AUEXF2481DRAFT_68224 Aureobasidium subglaciale AUEXF2481DRAFT_68224 I 0.426
estExt_Genewise1Plus.C_80270 Mycosphaerella fijiensis estExt_Genewise1Plus.C_80270 I 0.426
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.426
X797_001988 Metarhizium robertsii X797_001988 I 0.425
FFUJ_02729 Fusarium fujikuroi FFUJ_02729 I 0.425
MBR_01483 Metarhizium brunneum MBR_01483 I 0.425
GLRG_01394 Colletotrichum graminicola GLRG_01394 I 0.425
MANI_030028 Metarhizium anisopliae MANI_030028 I 0.425
S40288_09735 Stachybotrys chartarum S40288_09735 I 0.425
MGG_01641 Magnaporthe oryzae MGG_01641 I 0.425
CSUB01_00364 Colletotrichum sublineola CSUB01_00364 I 0.425
CFIO01_13531 Colletotrichum fioriniae CFIO01_13531 I 0.425
CGGC5_9539 Colletotrichum gloeosporioides CGGC5_9539 I 0.425
CH063_04081 Colletotrichum higginsianum CH063_04081 I 0.425
MGU_02157 Metarhizium guizhouense MGU_02157 I 0.425
MAJ_04030 Metarhizium majus MAJ_04030 I 0.425
HMPREF1541_06859 Cyphellophora europaea HMPREF1541_06859 I 0.423
MVLG_07162 Microbotryum violaceum MVLG_07162 I 0.422
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.422
PGUG_05245 Meyerozyma guilliermondii PGUG_05245 I 0.421
PGUG_05245 Candida guilliermondii PGUG_05245 I 0.421
BGHDH14_bgh04339 Blumeria graminis BGHDH14_bgh04339 I 0.421
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.421
RO3G_04704 Rhizopus oryzae RO3G_04704 I 0.419
SCHCODRAFT_76744 Schizophyllum commune SCHCODRAFT_76744 I 0.419
PHACADRAFT_164552 Phanerochaete carnosa PHACADRAFT_164552 I 0.419
PGTG_04701 Puccinia graminis PGTG_04701 I 0.417
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.416
A1Q1_01571 Trichosporon asahii A1Q1_01571 I 0.415