Ppa-hmg-1.1 (Pristionchus pacificus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PPA22767 T332189_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PPA22767 Sox 18 82

Links

Other Sox family TFs
Other Pristionchus pacificus TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g08227 Acanthocheilonema viteae nAv.1.0.1.g08227 N 0.625
AAEL011425 Aedes aegypti AAEL011425 I 0.446
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.446
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.446
ANCCAN_21638 Ancylostoma caninum ANCCAN_21638 I 0.549
ANCCAN_21637 Ancylostoma caninum ANCCAN_21637 N 0.486
ANCCAN_17708 Ancylostoma caninum ANCCAN_17708 I 0.549
ANCCAN_12424 Ancylostoma caninum ANCCAN_12424 I 0.549
ANCCAN_08230 Ancylostoma caninum ANCCAN_08230 I 0.530
ANCCAN_04253 Ancylostoma caninum ANCCAN_04253 N 0.493
ANCCEY_04224 Ancylostoma ceylanicum ANCCEY_04224 N 0.656
ANCCEY_10464 Ancylostoma ceylanicum ANCCEY_10464 N 0.486
ANCDUO_26276 Ancylostoma duodenale ANCDUO_26276 N 0.505
ANCDUO_11855 Ancylostoma duodenale ANCDUO_11855 N 0.486
ANCDUO_24920 Ancylostoma duodenale ANCDUO_24920 I 0.549
ANCDUO_12352 Ancylostoma duodenale ANCDUO_12352 N 0.656
ANCDUO_11856 Ancylostoma duodenale ANCDUO_11856 I 0.549
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N 0.529
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N 0.463
ACAC_0000817201 Angiostrongylus cantonensis ACAC_0000817201 N 0.656
ACOC_0000235301 Angiostrongylus costaricensis ACOC_0000235301 N 0.662
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N 0.463
ASIM_0000156001 Anisakis simplex ASIM_0000156001 N 0.463
ASIM_0001147101 Anisakis simplex ASIM_0001147101 N 0.604
ASIM_0001178701 Anisakis simplex ASIM_0001178701 N 0.705
GB47837 Apis mellifera GB47837 N 0.465
ALUE_0000365901 Ascaris lumbricoides ALUE_0000365901 N 0.679
ALUE_0000448701 Ascaris lumbricoides ALUE_0000448701 N 0.463
ALUE_0000605501 Ascaris lumbricoides ALUE_0000605501 N 0.518
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N 0.486
ASU_05752 Ascaris suum ASU_05752 N 0.463
ASU_05994 Ascaris suum ASU_05994 N 0.693
ASU_07820 Ascaris suum ASU_07820 N 0.518
ASU_09087 Ascaris suum ASU_09087 N 0.679
ACEP16621 Atta cephalotes ACEP16621 N 0.424
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.441
Bm8632 Brugia malayi Bm8632 N 0.625
Bm6643 Brugia malayi Bm6643 N 0.480
BTMF_0000229601 Brugia timori BTMF_0000229601 N 0.416
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I 0.632
BXY_1081900 Bursaphelenchus xylophilus BXY_1081900 I 0.625
CBN25379 Caenorhabditis brenneri CBN25379 I 0.518
CBN04053 Caenorhabditis brenneri CBN04053 N 0.478
CBG04066 Caenorhabditis briggsae CBG04066 N 0.460
CBG09136 Caenorhabditis briggsae CBG09136 N 0.484
CBG20663 Caenorhabditis briggsae CBG20663 N 0.529
hmg-4 Caenorhabditis elegans WBGene00001974 N 0.490
hmg-1.1 Caenorhabditis elegans WBGene00001971 N 0.697
CJA19030 Caenorhabditis japonica CJA19030 N 0.415
CJA04355 Caenorhabditis japonica CJA04355 N 0.709
CRE03995 Caenorhabditis remanei CRE03995 N 0.460
CRE11852 Caenorhabditis remanei CRE11852 N 0.688
ENSCJAG00000031139 Callithrix jacchus ENSCJAG00000031139 I 0.422
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.415
Cflo_05893--XP_624266.1_APIME Camponotus floridanus Cflo_05893--XP_624266.1_APIME N 0.465
CapteG172235 Capitella teleta CapteG172235 I 0.444
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.419
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.419
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.419
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.419
KGM_13851 Danaus plexippus KGM_13851 N 0.422
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.419
DICVIV_05502 Dictyocaulus viviparus DICVIV_05502 N 0.662
DICVIV_01337 Dictyocaulus viviparus DICVIV_01337 N 0.473
nDi.2.2.2.g08508 Dirofilaria immitis nDi.2.2.2.g08508 N 0.625
nDi.2.2.2.g04713 Dirofilaria immitis nDi.2.2.2.g04713 N 0.480
DME_0000590001 Dracunculus medinensis DME_0000590001 N 0.424
DME_0000779601 Dracunculus medinensis DME_0000779601 N 0.693
GF12460 Drosophila ananassae FBgn0089497 N 0.457
GG19998 Drosophila erecta FBgn0112197 N 0.457
GH21151 Drosophila grimshawi FBgn0128613 N 0.450
Ssrp Drosophila melanogaster FBgn0010278 N 0.457
GI18750 Drosophila mojavensis FBgn0141489 N 0.481
GL11071 Drosophila persimilis FBgn0148681 N 0.490
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.490
GD25013 Drosophila simulans FBgn0196325 N 0.457
GJ21774 Drosophila virilis FBgn0208892 N 0.457
GK22092 Drosophila willistoni FBgn0224077 N 0.485
GE11532 Drosophila yakuba FBgn0229332 N 0.457
ECANG7_00770 Echinococcus canadensis ECANG7_00770 N 0.429
EmuJ_000894800 Echinococcus multilocularis EmuJ_000894800 N 0.429
EEL_0000629001 Elaeophora elaphi EEL_0000629001 N 0.416
EVEC_0000171701 Enterobius vermicularis EVEC_0000171701 N 0.456
EVEC_0000079801 Enterobius vermicularis EVEC_0000079801 N 0.617
GPUH_0000029001 Gongylonema pulchrum GPUH_0000029001 N 0.424
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.461
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.461
HCOI01550200 Haemonchus contortus HCOI01550200 N 0.656
HCOI00417600 Haemonchus contortus HCOI00417600 N 0.486
HCOI01420700 Haemonchus contortus HCOI01420700 N 0.498
HCOI02106600 Haemonchus contortus HCOI02106600 N 0.498
HPLM_0000803901 Haemonchus placei HPLM_0000803901 N 0.486
HPLM_0001324601 Haemonchus placei HPLM_0001324601 N 0.656
Hsal_13112--XP_624266.1_APIME Harpegnathos saltator Hsal_13112--XP_624266.1_APIME N 0.465
HMEL015307 Heliconius melpomene HMEL015307 N 0.441
HPBE_0002310801 Heligmosomoides bakeri HPBE_0002310801 N 0.480
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I 0.498
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I 0.487
TTAC_0000692101 Hydatigera taeniaeformis TTAC_0000692101 N 0.429
HDID_0000239001 Hymenolepis diminuta HDID_0000239001 N 0.426
HmN_000028000 Hymenolepis microstoma HmN_000028000 N 0.453
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.453
nLs.2.1.2.g02941 Litomosoides sigmodontis nLs.2.1.2.g02941 N 0.467
nLs.2.1.2.g04082 Litomosoides sigmodontis nLs.2.1.2.g04082 N 0.625
LOAG_14354 Loa loa LOAG_14354 N 0.416
LOAG_08062 Loa loa LOAG_08062 N 0.625
ENSMMUG00000031258 Macaca mulatta ENSMMUG00000031258 I 0.422
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.418
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N 0.502
MhA1_Contig128.frz3.gene5 Meloidogyne hapla MhA1_Contig128.frz3.gene5 N 0.419
MhA1_Contig2971.frz3.fgene1 Meloidogyne hapla MhA1_Contig2971.frz3.fgene1 N 0.419
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N 0.502
Minc04648 Meloidogyne incognita Minc04648 N 0.502
Minc01744 Meloidogyne incognita Minc01744 N 0.425
Minc10016 Meloidogyne incognita Minc10016 N 0.425
Minc03634 Meloidogyne incognita Minc03634 N 0.502
MDOA007633 Musca domestica MDOA007633 N 0.457
NECAME_17555 Necator americanus NECAME_17555 N 0.662
NECAME_17981 Necator americanus NECAME_17981 N 0.662
NECAME_10840 Necator americanus NECAME_10840 N 0.486
NECAME_16525 Necator americanus NECAME_16525 N 0.529
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N 0.529
NBR_0001277401 Nippostrongylus brasiliensis NBR_0001277401 N 0.656
NBR_0001132501 Nippostrongylus brasiliensis NBR_0001132501 N 0.486
OESDEN_09619 Oesophagostomum dentatum OESDEN_09619 N 0.656
OFLC_0000496201 Onchocerca flexuosa OFLC_0000496201 N 0.416
nOo.2.0.1.g01970 Onchocerca ochengi nOo.2.0.1.g01970 N 0.416
nOo.2.0.1.g04693 Onchocerca ochengi nOo.2.0.1.g04693 N 0.625
WBGene00237022 Onchocerca volvulus WBGene00237022 N 0.416
WBGene00238628 Onchocerca volvulus WBGene00238628 N 0.625
OSTLU_31946 Ostreococcus lucimarinus OSTLU_31946 I 0.486
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.420
PTRK_0000111400 Parastrongyloides trichosuri PTRK_0000111400 N 0.502
PTRK_0001490800 Parastrongyloides trichosuri PTRK_0001490800 N 0.627
PTRK_0001161700 Parastrongyloides trichosuri PTRK_0001161700 N 0.619
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.425
PPAI002522 Phlebotomus papatasi PPAI002522 I 0.417
scaffold1425-EXSNAP2012.3 Pristionchus exspectatus scaffold1425-EXSNAP2012.3 N 0.741
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N 0.556
scaffold113-EXSNAP2012.49 Pristionchus exspectatus scaffold113-EXSNAP2012.49 N 0.741
scaffold164-EXSNAP2012.19 Pristionchus exspectatus scaffold164-EXSNAP2012.19 N 0.523
PPA06513 Pristionchus pacificus PPA06513 N 0.556
PPA02261 Pristionchus pacificus PPA02261 N 0.523
PPA14042 Pristionchus pacificus PPA14042 N 0.498
RSKR_0000128800 Rhabditophanes kr3021 RSKR_0000128800 N 0.547
RSKR_0000746900 Rhabditophanes kr3021 RSKR_0000746900 N 0.552
RSKR_0000587700 Rhabditophanes kr3021 RSKR_0000587700 N 0.603
RSKR_0000269500 Rhabditophanes kr3021 RSKR_0000269500 N 0.495
RSKR_0000269200 Rhabditophanes kr3021 RSKR_0000269200 N 0.521
SINV22588 Solenopsis invicta SINV22588 N 0.465
L596_g16476 Steinernema carpocapsae L596_g16476 N 0.665
L596_g8199 Steinernema carpocapsae L596_g8199 N 0.476
L596_g28088 Steinernema carpocapsae L596_g28088 N 0.693
L889_g16198 Steinernema feltiae L889_g16198 N 0.641
L889_g9094 Steinernema feltiae L889_g9094 N 0.693
L889_g6592 Steinernema feltiae L889_g6592 N 0.554
L889_g27280 Steinernema feltiae L889_g27280 N 0.452
L889_g29516 Steinernema feltiae L889_g29516 N 0.522
L889_g30211 Steinernema feltiae L889_g30211 N 0.447
L893_g23503 Steinernema glaseri L893_g23503 N 0.630
L893_g29974 Steinernema glaseri L893_g29974 N 0.693
L898_g4830 Steinernema monticolum L898_g4830 N 0.693
L898_g7743 Steinernema monticolum L898_g7743 N 0.630
L898_g23313 Steinernema monticolum L898_g23313 N 0.438
L892_g2503 Steinernema scapterisci L892_g2503 N 0.476
L892_g23618 Steinernema scapterisci L892_g23618 N 0.665
L892_g19058 Steinernema scapterisci L892_g19058 N 0.693
SMAR015352 Strigamia maritima SMAR015352 N 0.421
SPAL_0001421900 Strongyloides papillosus SPAL_0001421900 N 0.490
SPAL_0000986100 Strongyloides papillosus SPAL_0000986100 N 0.662
SPAL_0001085700 Strongyloides papillosus SPAL_0001085700 N 0.619
SSTP_0001024100 Strongyloides stercoralis SSTP_0001024100 N 0.662
SSTP_0000585600 Strongyloides stercoralis SSTP_0000585600 N 0.619
SSTP_0000790100 Strongyloides stercoralis SSTP_0000790100 N 0.484
SVE_0294800 Strongyloides venezuelensis SVE_0294800 N 0.662
SVE_0954900 Strongyloides venezuelensis SVE_0954900 N 0.619
SVE_0536900 Strongyloides venezuelensis SVE_0536900 N 0.490
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N 0.529
SVUK_0001398701 Strongylus vulgaris SVUK_0001398701 N 0.473
SMUV_0000499601 Syphacia muris SMUV_0000499601 N 0.645
TASK_0000475801 Taenia asiatica TASK_0000475801 N 0.429
TsM_000111500 Taenia solium TsM_000111500 N 0.429
TELCIR_22690 Teladorsagia circumcincta TELCIR_22690 N 0.486
TELCIR_05217 Teladorsagia circumcincta TELCIR_05217 N 0.486
TELCIR_02603 Teladorsagia circumcincta TELCIR_02603 N 0.656
tetur02g08250 Tetranychus urticae tetur02g08250 N 0.547
TCNE_0001025901 Toxocara canis TCNE_0001025901 N 0.693
TCNE_0000520101 Toxocara canis TCNE_0000520101 N 0.486
TCNE_0000332201 Toxocara canis TCNE_0000332201 N 0.673
TriadG64155 Trichoplax adhaerens TriadG64155 I 0.434
WUBG_02390 Wuchereria bancrofti WUBG_02390 N 0.416