Ppa-hmg-1.1 (Pristionchus pacificus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PPA22767 T332189_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PPA22767 Sox 18 82

Links

Other Sox family TFs
Other Pristionchus pacificus TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold113-EXSNAP2012.49 Pristionchus exspectatus scaffold113-EXSNAP2012.49 N 0.741
scaffold1425-EXSNAP2012.3 Pristionchus exspectatus scaffold1425-EXSNAP2012.3 N 0.741
CJA04355 Caenorhabditis japonica CJA04355 N 0.709
ASIM_0001178701 Anisakis simplex ASIM_0001178701 N 0.705
hmg-1.1 Caenorhabditis elegans WBGene00001971 N 0.697
TCNE_0001025901 Toxocara canis TCNE_0001025901 N 0.693
DME_0000779601 Dracunculus medinensis DME_0000779601 N 0.693
L596_g28088 Steinernema carpocapsae L596_g28088 N 0.693
L892_g19058 Steinernema scapterisci L892_g19058 N 0.693
L898_g4830 Steinernema monticolum L898_g4830 N 0.693
L893_g29974 Steinernema glaseri L893_g29974 N 0.693
L889_g9094 Steinernema feltiae L889_g9094 N 0.693
ASU_05994 Ascaris suum ASU_05994 N 0.693
CRE11852 Caenorhabditis remanei CRE11852 N 0.688
ASU_09087 Ascaris suum ASU_09087 N 0.679
ALUE_0000365901 Ascaris lumbricoides ALUE_0000365901 N 0.679
TCNE_0000332201 Toxocara canis TCNE_0000332201 N 0.673
L892_g23618 Steinernema scapterisci L892_g23618 N 0.665
L596_g16476 Steinernema carpocapsae L596_g16476 N 0.665
NECAME_17555 Necator americanus NECAME_17555 N 0.662
ACOC_0000235301 Angiostrongylus costaricensis ACOC_0000235301 N 0.662
DICVIV_05502 Dictyocaulus viviparus DICVIV_05502 N 0.662
NECAME_17981 Necator americanus NECAME_17981 N 0.662
SSTP_0001024100 Strongyloides stercoralis SSTP_0001024100 N 0.662
SPAL_0000986100 Strongyloides papillosus SPAL_0000986100 N 0.662
SVE_0294800 Strongyloides venezuelensis SVE_0294800 N 0.662
HPLM_0001324601 Haemonchus placei HPLM_0001324601 N 0.656
HCOI01550200 Haemonchus contortus HCOI01550200 N 0.656
OESDEN_09619 Oesophagostomum dentatum OESDEN_09619 N 0.656
TELCIR_02603 Teladorsagia circumcincta TELCIR_02603 N 0.656
ANCCEY_04224 Ancylostoma ceylanicum ANCCEY_04224 N 0.656
ANCDUO_12352 Ancylostoma duodenale ANCDUO_12352 N 0.656
ACAC_0000817201 Angiostrongylus cantonensis ACAC_0000817201 N 0.656
NBR_0001277401 Nippostrongylus brasiliensis NBR_0001277401 N 0.656
SMUV_0000499601 Syphacia muris SMUV_0000499601 N 0.645
L889_g16198 Steinernema feltiae L889_g16198 N 0.641
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I 0.632
L898_g7743 Steinernema monticolum L898_g7743 N 0.630
L893_g23503 Steinernema glaseri L893_g23503 N 0.630
PTRK_0001490800 Parastrongyloides trichosuri PTRK_0001490800 N 0.627
WBGene00238628 Onchocerca volvulus WBGene00238628 N 0.625
nOo.2.0.1.g04693 Onchocerca ochengi nOo.2.0.1.g04693 N 0.625
nDi.2.2.2.g08508 Dirofilaria immitis nDi.2.2.2.g08508 N 0.625
nAv.1.0.1.g08227 Acanthocheilonema viteae nAv.1.0.1.g08227 N 0.625
Bm8632 Brugia malayi Bm8632 N 0.625
nLs.2.1.2.g04082 Litomosoides sigmodontis nLs.2.1.2.g04082 N 0.625
BXY_1081900 Bursaphelenchus xylophilus BXY_1081900 I 0.625
LOAG_08062 Loa loa LOAG_08062 N 0.625
SPAL_0001085700 Strongyloides papillosus SPAL_0001085700 N 0.619
PTRK_0001161700 Parastrongyloides trichosuri PTRK_0001161700 N 0.619
SSTP_0000585600 Strongyloides stercoralis SSTP_0000585600 N 0.619
SVE_0954900 Strongyloides venezuelensis SVE_0954900 N 0.619
EVEC_0000079801 Enterobius vermicularis EVEC_0000079801 N 0.617
ASIM_0001147101 Anisakis simplex ASIM_0001147101 N 0.604
RSKR_0000587700 Rhabditophanes kr3021 RSKR_0000587700 N 0.603
PPA06513 Pristionchus pacificus PPA06513 N 0.556
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N 0.556
L889_g6592 Steinernema feltiae L889_g6592 N 0.554
RSKR_0000746900 Rhabditophanes kr3021 RSKR_0000746900 N 0.552
ANCCAN_21638 Ancylostoma caninum ANCCAN_21638 I 0.549
ANCCAN_17708 Ancylostoma caninum ANCCAN_17708 I 0.549
ANCDUO_11856 Ancylostoma duodenale ANCDUO_11856 I 0.549
ANCCAN_12424 Ancylostoma caninum ANCCAN_12424 I 0.549
ANCDUO_24920 Ancylostoma duodenale ANCDUO_24920 I 0.549
RSKR_0000128800 Rhabditophanes kr3021 RSKR_0000128800 N 0.547
tetur02g08250 Tetranychus urticae tetur02g08250 N 0.547
ANCCAN_08230 Ancylostoma caninum ANCCAN_08230 I 0.530
NECAME_16525 Necator americanus NECAME_16525 N 0.529
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N 0.529
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N 0.529
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N 0.529
CBG20663 Caenorhabditis briggsae CBG20663 N 0.529
scaffold164-EXSNAP2012.19 Pristionchus exspectatus scaffold164-EXSNAP2012.19 N 0.523
PPA02261 Pristionchus pacificus PPA02261 N 0.523
L889_g29516 Steinernema feltiae L889_g29516 N 0.522
RSKR_0000269200 Rhabditophanes kr3021 RSKR_0000269200 N 0.521
ASU_07820 Ascaris suum ASU_07820 N 0.518
CBN25379 Caenorhabditis brenneri CBN25379 I 0.518
ALUE_0000605501 Ascaris lumbricoides ALUE_0000605501 N 0.518
ANCDUO_26276 Ancylostoma duodenale ANCDUO_26276 N 0.505
Minc04648 Meloidogyne incognita Minc04648 N 0.502
Minc03634 Meloidogyne incognita Minc03634 N 0.502
PTRK_0000111400 Parastrongyloides trichosuri PTRK_0000111400 N 0.502
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N 0.502
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N 0.502
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I 0.498
HCOI01420700 Haemonchus contortus HCOI01420700 N 0.498
HCOI02106600 Haemonchus contortus HCOI02106600 N 0.498
PPA14042 Pristionchus pacificus PPA14042 N 0.498
RSKR_0000269500 Rhabditophanes kr3021 RSKR_0000269500 N 0.495
ANCCAN_04253 Ancylostoma caninum ANCCAN_04253 N 0.493
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.490
hmg-4 Caenorhabditis elegans WBGene00001974 N 0.490
GL11071 Drosophila persimilis FBgn0148681 N 0.490
SPAL_0001421900 Strongyloides papillosus SPAL_0001421900 N 0.490
SVE_0536900 Strongyloides venezuelensis SVE_0536900 N 0.490
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I 0.487
TCNE_0000520101 Toxocara canis TCNE_0000520101 N 0.486
ANCCAN_21637 Ancylostoma caninum ANCCAN_21637 N 0.486
TELCIR_05217 Teladorsagia circumcincta TELCIR_05217 N 0.486
NBR_0001132501 Nippostrongylus brasiliensis NBR_0001132501 N 0.486
HCOI00417600 Haemonchus contortus HCOI00417600 N 0.486
TELCIR_22690 Teladorsagia circumcincta TELCIR_22690 N 0.486
NECAME_10840 Necator americanus NECAME_10840 N 0.486
OSTLU_31946 Ostreococcus lucimarinus OSTLU_31946 I 0.486
ANCDUO_11855 Ancylostoma duodenale ANCDUO_11855 N 0.486
HPLM_0000803901 Haemonchus placei HPLM_0000803901 N 0.486
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N 0.486
ANCCEY_10464 Ancylostoma ceylanicum ANCCEY_10464 N 0.486
GK22092 Drosophila willistoni FBgn0224077 N 0.485
SSTP_0000790100 Strongyloides stercoralis SSTP_0000790100 N 0.484
CBG09136 Caenorhabditis briggsae CBG09136 N 0.484
GI18750 Drosophila mojavensis FBgn0141489 N 0.481
Bm6643 Brugia malayi Bm6643 N 0.480
nDi.2.2.2.g04713 Dirofilaria immitis nDi.2.2.2.g04713 N 0.480
HPBE_0002310801 Heligmosomoides bakeri HPBE_0002310801 N 0.480
CBN04053 Caenorhabditis brenneri CBN04053 N 0.478
L596_g8199 Steinernema carpocapsae L596_g8199 N 0.476
L892_g2503 Steinernema scapterisci L892_g2503 N 0.476
SVUK_0001398701 Strongylus vulgaris SVUK_0001398701 N 0.473
DICVIV_01337 Dictyocaulus viviparus DICVIV_01337 N 0.473
nLs.2.1.2.g02941 Litomosoides sigmodontis nLs.2.1.2.g02941 N 0.467
Cflo_05893--XP_624266.1_APIME Camponotus floridanus Cflo_05893--XP_624266.1_APIME N 0.465
Hsal_13112--XP_624266.1_APIME Harpegnathos saltator Hsal_13112--XP_624266.1_APIME N 0.465
SINV22588 Solenopsis invicta SINV22588 N 0.465
GB47837 Apis mellifera GB47837 N 0.465
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N 0.463
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N 0.463
ASIM_0000156001 Anisakis simplex ASIM_0000156001 N 0.463
ALUE_0000448701 Ascaris lumbricoides ALUE_0000448701 N 0.463
ASU_05752 Ascaris suum ASU_05752 N 0.463
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.461
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.461
CBG04066 Caenorhabditis briggsae CBG04066 N 0.460
CRE03995 Caenorhabditis remanei CRE03995 N 0.460
GF12460 Drosophila ananassae FBgn0089497 N 0.457
MDOA007633 Musca domestica MDOA007633 N 0.457
GE11532 Drosophila yakuba FBgn0229332 N 0.457
Ssrp Drosophila melanogaster FBgn0010278 N 0.457
GG19998 Drosophila erecta FBgn0112197 N 0.457
GJ21774 Drosophila virilis FBgn0208892 N 0.457
GD25013 Drosophila simulans FBgn0196325 N 0.457
EVEC_0000171701 Enterobius vermicularis EVEC_0000171701 N 0.456
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.453
HmN_000028000 Hymenolepis microstoma HmN_000028000 N 0.453
L889_g27280 Steinernema feltiae L889_g27280 N 0.452
GH21151 Drosophila grimshawi FBgn0128613 N 0.450
L889_g30211 Steinernema feltiae L889_g30211 N 0.447
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.446
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.446
AAEL011425 Aedes aegypti AAEL011425 I 0.446
CapteG172235 Capitella teleta CapteG172235 I 0.444
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.441
HMEL015307 Heliconius melpomene HMEL015307 N 0.441
L898_g23313 Steinernema monticolum L898_g23313 N 0.438
TriadG64155 Trichoplax adhaerens TriadG64155 I 0.434
EmuJ_000894800 Echinococcus multilocularis EmuJ_000894800 N 0.429
TASK_0000475801 Taenia asiatica TASK_0000475801 N 0.429
TsM_000111500 Taenia solium TsM_000111500 N 0.429
TTAC_0000692101 Hydatigera taeniaeformis TTAC_0000692101 N 0.429
ECANG7_00770 Echinococcus canadensis ECANG7_00770 N 0.429
HDID_0000239001 Hymenolepis diminuta HDID_0000239001 N 0.426
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.425
Minc01744 Meloidogyne incognita Minc01744 N 0.425
Minc10016 Meloidogyne incognita Minc10016 N 0.425
ACEP16621 Atta cephalotes ACEP16621 N 0.424
GPUH_0000029001 Gongylonema pulchrum GPUH_0000029001 N 0.424
DME_0000590001 Dracunculus medinensis DME_0000590001 N 0.424
KGM_13851 Danaus plexippus KGM_13851 N 0.422
ENSCJAG00000031139 Callithrix jacchus ENSCJAG00000031139 I 0.422
ENSMMUG00000031258 Macaca mulatta ENSMMUG00000031258 I 0.422
SMAR015352 Strigamia maritima SMAR015352 N 0.421
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.420
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.419
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.419
MhA1_Contig128.frz3.gene5 Meloidogyne hapla MhA1_Contig128.frz3.gene5 N 0.419
MhA1_Contig2971.frz3.fgene1 Meloidogyne hapla MhA1_Contig2971.frz3.fgene1 N 0.419
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.419
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.419
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.419
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.418
PPAI002522 Phlebotomus papatasi PPAI002522 I 0.417
BTMF_0000229601 Brugia timori BTMF_0000229601 N 0.416
LOAG_14354 Loa loa LOAG_14354 N 0.416
WUBG_02390 Wuchereria bancrofti WUBG_02390 N 0.416
OFLC_0000496201 Onchocerca flexuosa OFLC_0000496201 N 0.416
WBGene00237022 Onchocerca volvulus WBGene00237022 N 0.416
EEL_0000629001 Elaeophora elaphi EEL_0000629001 N 0.416
nOo.2.0.1.g01970 Onchocerca ochengi nOo.2.0.1.g01970 N 0.416
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.415
CJA19030 Caenorhabditis japonica CJA19030 N 0.415