hmg-1.1 (Caenorhabditis elegans)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 WBGene00001971 T333267_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA binding activity, bending and transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including pharynx; ventral nerve cord; and vulva. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Y48B6A.14 Sox 28 92

Links

Other Sox family TFs
Other Caenorhabditis elegans TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE11852 Caenorhabditis remanei CRE11852 N 0.731
CJA04355 Caenorhabditis japonica CJA04355 N 0.727
ASIM_0001178701 Anisakis simplex ASIM_0001178701 N 0.716
ASU_05994 Ascaris suum ASU_05994 N 0.704
TCNE_0001025901 Toxocara canis TCNE_0001025901 N 0.704
Ppa-hmg-1.1 Pristionchus pacificus PPA22767 N 0.697
L889_g9094 Steinernema feltiae L889_g9094 N 0.697
scaffold1425-EXSNAP2012.3 Pristionchus exspectatus scaffold1425-EXSNAP2012.3 N 0.697
scaffold113-EXSNAP2012.49 Pristionchus exspectatus scaffold113-EXSNAP2012.49 N 0.697
L898_g4830 Steinernema monticolum L898_g4830 N 0.695
DME_0000779601 Dracunculus medinensis DME_0000779601 N 0.695
L596_g28088 Steinernema carpocapsae L596_g28088 N 0.695
L893_g29974 Steinernema glaseri L893_g29974 N 0.695
L892_g19058 Steinernema scapterisci L892_g19058 N 0.695
TELCIR_02603 Teladorsagia circumcincta TELCIR_02603 N 0.686
ANCDUO_12352 Ancylostoma duodenale ANCDUO_12352 N 0.686
ACAC_0000817201 Angiostrongylus cantonensis ACAC_0000817201 N 0.686
HCOI01550200 Haemonchus contortus HCOI01550200 N 0.686
NBR_0001277401 Nippostrongylus brasiliensis NBR_0001277401 N 0.686
HPLM_0001324601 Haemonchus placei HPLM_0001324601 N 0.686
OESDEN_09619 Oesophagostomum dentatum OESDEN_09619 N 0.686
ANCCEY_04224 Ancylostoma ceylanicum ANCCEY_04224 N 0.686
SSTP_0001024100 Strongyloides stercoralis SSTP_0001024100 N 0.680
NECAME_17981 Necator americanus NECAME_17981 N 0.680
DICVIV_05502 Dictyocaulus viviparus DICVIV_05502 N 0.680
SPAL_0000986100 Strongyloides papillosus SPAL_0000986100 N 0.680
NECAME_17555 Necator americanus NECAME_17555 N 0.680
ACOC_0000235301 Angiostrongylus costaricensis ACOC_0000235301 N 0.680
SVE_0294800 Strongyloides venezuelensis SVE_0294800 N 0.680
L596_g16476 Steinernema carpocapsae L596_g16476 N 0.673
L892_g23618 Steinernema scapterisci L892_g23618 N 0.673
TCNE_0000332201 Toxocara canis TCNE_0000332201 N 0.670
ASU_09087 Ascaris suum ASU_09087 N 0.664
ALUE_0000365901 Ascaris lumbricoides ALUE_0000365901 N 0.664
PTRK_0001490800 Parastrongyloides trichosuri PTRK_0001490800 N 0.651
L889_g16198 Steinernema feltiae L889_g16198 N 0.642
L893_g23503 Steinernema glaseri L893_g23503 N 0.637
RSKR_0000587700 Rhabditophanes kr3021 RSKR_0000587700 N 0.633
L898_g7743 Steinernema monticolum L898_g7743 N 0.632
EVEC_0000079801 Enterobius vermicularis EVEC_0000079801 N 0.628
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I 0.627
nLs.2.1.2.g04082 Litomosoides sigmodontis nLs.2.1.2.g04082 N 0.623
Bm8632 Brugia malayi Bm8632 N 0.623
nDi.2.2.2.g08508 Dirofilaria immitis nDi.2.2.2.g08508 N 0.623
nOo.2.0.1.g04693 Onchocerca ochengi nOo.2.0.1.g04693 N 0.623
WBGene00238628 Onchocerca volvulus WBGene00238628 N 0.623
LOAG_08062 Loa loa LOAG_08062 N 0.623
nAv.1.0.1.g08227 Acanthocheilonema viteae nAv.1.0.1.g08227 N 0.623
BXY_1081900 Bursaphelenchus xylophilus BXY_1081900 I 0.617
SMUV_0000499601 Syphacia muris SMUV_0000499601 N 0.617
ASIM_0001147101 Anisakis simplex ASIM_0001147101 N 0.601
PTRK_0001161700 Parastrongyloides trichosuri PTRK_0001161700 N 0.596
SSTP_0000585600 Strongyloides stercoralis SSTP_0000585600 N 0.596
SVE_0954900 Strongyloides venezuelensis SVE_0954900 N 0.596
SPAL_0001085700 Strongyloides papillosus SPAL_0001085700 N 0.596
NECAME_16525 Necator americanus NECAME_16525 N 0.559
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N 0.559
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N 0.559
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N 0.559
CBG20663 Caenorhabditis briggsae CBG20663 N 0.559
L889_g6592 Steinernema feltiae L889_g6592 N 0.556
RSKR_0000746900 Rhabditophanes kr3021 RSKR_0000746900 N 0.555
tetur02g08250 Tetranychus urticae tetur02g08250 N 0.551
PPA06513 Pristionchus pacificus PPA06513 N 0.546
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N 0.546
Minc04648 Meloidogyne incognita Minc04648 N 0.541
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N 0.541
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N 0.541
Minc03634 Meloidogyne incognita Minc03634 N 0.541
ANCDUO_24920 Ancylostoma duodenale ANCDUO_24920 I 0.539
ANCDUO_11856 Ancylostoma duodenale ANCDUO_11856 I 0.539
ANCCAN_12424 Ancylostoma caninum ANCCAN_12424 I 0.539
ANCCAN_21638 Ancylostoma caninum ANCCAN_21638 I 0.539
ANCCAN_17708 Ancylostoma caninum ANCCAN_17708 I 0.539
RSKR_0000128800 Rhabditophanes kr3021 RSKR_0000128800 N 0.537
HCOI02106600 Haemonchus contortus HCOI02106600 N 0.528
HCOI01420700 Haemonchus contortus HCOI01420700 N 0.528
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I 0.528
PPA02261 Pristionchus pacificus PPA02261 N 0.526
scaffold164-EXSNAP2012.19 Pristionchus exspectatus scaffold164-EXSNAP2012.19 N 0.526
L889_g29516 Steinernema feltiae L889_g29516 N 0.524
ANCCAN_08230 Ancylostoma caninum ANCCAN_08230 I 0.520
CBN25379 Caenorhabditis brenneri CBN25379 I 0.512
RSKR_0000269200 Rhabditophanes kr3021 RSKR_0000269200 N 0.510
SPAL_0001421900 Strongyloides papillosus SPAL_0001421900 N 0.506
SVE_0536900 Strongyloides venezuelensis SVE_0536900 N 0.506
GK22092 Drosophila willistoni FBgn0224077 N 0.503
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.501
GL11071 Drosophila persimilis FBgn0148681 N 0.501
SSTP_0000790100 Strongyloides stercoralis SSTP_0000790100 N 0.500
ALUE_0000605501 Ascaris lumbricoides ALUE_0000605501 N 0.496
OSTLU_31946 Ostreococcus lucimarinus OSTLU_31946 I 0.496
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I 0.496
ASU_07820 Ascaris suum ASU_07820 N 0.496
ANCDUO_26276 Ancylostoma duodenale ANCDUO_26276 N 0.495
CBN04053 Caenorhabditis brenneri CBN04053 N 0.494
GI18750 Drosophila mojavensis FBgn0141489 N 0.489
PTRK_0000111400 Parastrongyloides trichosuri PTRK_0000111400 N 0.487
PPA14042 Pristionchus pacificus PPA14042 N 0.486
RSKR_0000269500 Rhabditophanes kr3021 RSKR_0000269500 N 0.485
ANCCAN_04253 Ancylostoma caninum ANCCAN_04253 N 0.483
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N 0.481
TCNE_0000520101 Toxocara canis TCNE_0000520101 N 0.481
AAEL011425 Aedes aegypti AAEL011425 I 0.480
hmg-4 Caenorhabditis elegans WBGene00001974 N 0.479
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.479
CRE03995 Caenorhabditis remanei CRE03995 N 0.479
CBG09136 Caenorhabditis briggsae CBG09136 N 0.479
GD25013 Drosophila simulans FBgn0196325 N 0.474
GG19998 Drosophila erecta FBgn0112197 N 0.474
GF12460 Drosophila ananassae FBgn0089497 N 0.474
GJ21774 Drosophila virilis FBgn0208892 N 0.474
GE11532 Drosophila yakuba FBgn0229332 N 0.474
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N 0.474
Ssrp Drosophila melanogaster FBgn0010278 N 0.474
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N 0.474
MDOA007633 Musca domestica MDOA007633 N 0.474
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.473
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.473
nDi.2.2.2.g04713 Dirofilaria immitis nDi.2.2.2.g04713 N 0.472
Bm6643 Brugia malayi Bm6643 N 0.472
nLs.2.1.2.g02941 Litomosoides sigmodontis nLs.2.1.2.g02941 N 0.472
HmN_000028000 Hymenolepis microstoma HmN_000028000 N 0.470
HPBE_0002310801 Heligmosomoides bakeri HPBE_0002310801 N 0.470
CBG04066 Caenorhabditis briggsae CBG04066 N 0.469
CapteG172235 Capitella teleta CapteG172235 I 0.465
SVUK_0001398701 Strongylus vulgaris SVUK_0001398701 N 0.463
DICVIV_01337 Dictyocaulus viviparus DICVIV_01337 N 0.463
HPLM_0000803901 Haemonchus placei HPLM_0000803901 N 0.463
TELCIR_05217 Teladorsagia circumcincta TELCIR_05217 N 0.463
NECAME_10840 Necator americanus NECAME_10840 N 0.463
ANCCEY_10464 Ancylostoma ceylanicum ANCCEY_10464 N 0.463
ANCDUO_11855 Ancylostoma duodenale ANCDUO_11855 N 0.463
TELCIR_22690 Teladorsagia circumcincta TELCIR_22690 N 0.463
ANCCAN_21637 Ancylostoma caninum ANCCAN_21637 N 0.463
NBR_0001132501 Nippostrongylus brasiliensis NBR_0001132501 N 0.463
HCOI00417600 Haemonchus contortus HCOI00417600 N 0.463
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.462
HMEL015307 Heliconius melpomene HMEL015307 N 0.462
GH21151 Drosophila grimshawi FBgn0128613 N 0.461
ENSCJAG00000031139 Callithrix jacchus ENSCJAG00000031139 I 0.454
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.453
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.453
ASU_05752 Ascaris suum ASU_05752 N 0.453
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.453
ALUE_0000448701 Ascaris lumbricoides ALUE_0000448701 N 0.453
PPAI002522 Phlebotomus papatasi PPAI002522 I 0.453
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.453
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.453
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.453
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.452
SINV22588 Solenopsis invicta SINV22588 N 0.452
Cflo_05893--XP_624266.1_APIME Camponotus floridanus Cflo_05893--XP_624266.1_APIME N 0.452
Hsal_13112--XP_624266.1_APIME Harpegnathos saltator Hsal_13112--XP_624266.1_APIME N 0.452
GB47837 Apis mellifera GB47837 N 0.452
ASIM_0000156001 Anisakis simplex ASIM_0000156001 N 0.451
L889_g27280 Steinernema feltiae L889_g27280 N 0.450
L889_g30211 Steinernema feltiae L889_g30211 N 0.449
Minc01744 Meloidogyne incognita Minc01744 N 0.448
TASK_0000475801 Taenia asiatica TASK_0000475801 N 0.448
Minc10016 Meloidogyne incognita Minc10016 N 0.448
TsM_000111500 Taenia solium TsM_000111500 N 0.448
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.448
L596_g8199 Steinernema carpocapsae L596_g8199 N 0.446
L892_g2503 Steinernema scapterisci L892_g2503 N 0.446
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.445
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.445
ENSMMUG00000031258 Macaca mulatta ENSMMUG00000031258 I 0.444
KGM_13851 Danaus plexippus KGM_13851 N 0.443
TriadG64155 Trichoplax adhaerens TriadG64155 I 0.442
MhA1_Contig128.frz3.gene5 Meloidogyne hapla MhA1_Contig128.frz3.gene5 N 0.442
MhA1_Contig2971.frz3.fgene1 Meloidogyne hapla MhA1_Contig2971.frz3.fgene1 N 0.442
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.438
GF11622 Drosophila ananassae FBgn0088662 I 0.437
GA14726 Drosophila pseudoobscura FBgn0074753 I 0.437
HmgZ Drosophila yakuba FBgn0068145 I 0.437
GG20749 Drosophila erecta FBgn0112936 I 0.437
GH20784 Drosophila grimshawi FBgn0128247 I 0.437
GD25171 Drosophila simulans FBgn0196483 I 0.437
GJ20604 Drosophila virilis FBgn0207743 I 0.437
GK15658 Drosophila willistoni FBgn0217663 I 0.437
GI20867 Drosophila mojavensis FBgn0143601 I 0.437
HmgZ Drosophila melanogaster FBgn0010228 I 0.437
GL17523 Drosophila persimilis FBgn0155126 I 0.437
GM15692 Drosophila sechellia FBgn0170608 I 0.437
ENSOGAG00000031524 Otolemur garnettii ENSOGAG00000031524 I 0.437
TTAC_0000692101 Hydatigera taeniaeformis TTAC_0000692101 N 0.436
EmuJ_000894800 Echinococcus multilocularis EmuJ_000894800 N 0.436
ECANG7_00770 Echinococcus canadensis ECANG7_00770 N 0.436
LCUP005047 Lucilia cuprina LCUP005047 N 0.435
EVEC_0000171701 Enterobius vermicularis EVEC_0000171701 N 0.433
MDOA014797 Musca domestica MDOA014797 I 0.431
AABR07009373.1 Rattus norvegicus ENSRNOG00000011429 I 0.430
HDID_0000239001 Hymenolepis diminuta HDID_0000239001 N 0.430
CJA19030 Caenorhabditis japonica CJA19030 N 0.424
SMTD_0001155301 Schistosoma mattheei SMTD_0001155301 N 0.423
Smp_148930 Schistosoma mansoni Smp_148930 N 0.423
Sjc_0035580 Schistosoma japonicum Sjc_0035580 N 0.423
A_01848 Schistosoma haematobium A_01848 N 0.423
SCUD_0000070901 Schistosoma curassoni SCUD_0000070901 N 0.423
SMAR015352 Strigamia maritima SMAR015352 N 0.422
OSTLU_18991 Ostreococcus lucimarinus OSTLU_18991 N 0.421
GB54571 Apis mellifera GB54571 N 0.419
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.419
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.419
MTR_5g082570 Medicago truncatula MTR_5g082570 I 0.418
HMGB2 Ochotona princeps ENSOPRG00000010124 I 0.418
BGIBMGA005289 Bombyx mori BGIBMGA005289 I 0.417
KGM_13852 Danaus plexippus KGM_13852 I 0.417
MCINX001064 Melitaea cinxia MCINX001064 I 0.417
mgf024995m Mimulus guttatus mgf024995m I 0.415
HNAJ_0000793101 Hymenolepis nana HNAJ_0000793101 I 0.415