hmg-4 (Caenorhabditis elegans)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 WBGene00001974 T333270_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable histone binding activity and nucleosome binding activity. Involved in pharynx development and regulation of embryonic development. Located in nucleus. Is expressed in several structures, including germ line; head muscle; neurons; somatic cell; and somatic nervous system. Orthologous to human SSRP1 (structure specific recognition protein 1). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
T20B12.8 Sox 556 622

Links

Other Sox family TFs
Other Caenorhabditis elegans TFs

244 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG09136 Caenorhabditis briggsae CBG09136 N 0.684
CBN25379 Caenorhabditis brenneri CBN25379 I 0.653
CJA19030 Caenorhabditis japonica CJA19030 N 0.615
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N 0.608
Minc03634 Meloidogyne incognita Minc03634 N 0.608
Minc04648 Meloidogyne incognita Minc04648 N 0.608
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N 0.608
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N 0.605
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I 0.574
HCOI01420700 Haemonchus contortus HCOI01420700 N 0.574
HCOI02106600 Haemonchus contortus HCOI02106600 N 0.574
NECAME_16525 Necator americanus NECAME_16525 N 0.566
CBG04066 Caenorhabditis briggsae CBG04066 N 0.566
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N 0.566
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N 0.566
CRE03995 Caenorhabditis remanei CRE03995 N 0.559
ANCCAN_17708 Ancylostoma caninum ANCCAN_17708 I 0.547
ANCCAN_12424 Ancylostoma caninum ANCCAN_12424 I 0.547
ANCDUO_11856 Ancylostoma duodenale ANCDUO_11856 I 0.547
ANCCAN_21638 Ancylostoma caninum ANCCAN_21638 I 0.547
ANCDUO_24920 Ancylostoma duodenale ANCDUO_24920 I 0.547
L889_g29516 Steinernema feltiae L889_g29516 N 0.542
BXY_1081900 Bursaphelenchus xylophilus BXY_1081900 I 0.539
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N 0.535
PPA06513 Pristionchus pacificus PPA06513 N 0.535
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I 0.533
RSKR_0000128800 Rhabditophanes kr3021 RSKR_0000128800 N 0.523
ANCCAN_08230 Ancylostoma caninum ANCCAN_08230 I 0.519
HDID_0000239001 Hymenolepis diminuta HDID_0000239001 N 0.514
nOo.2.0.1.g02324 Onchocerca ochengi nOo.2.0.1.g02324 N 0.509
RSKR_0000733200 Rhabditophanes kr3021 RSKR_0000733200 N 0.509
WBGene00244511 Onchocerca volvulus WBGene00244511 N 0.509
gw1.6.1665.1 Ostreococcus RCC809 gw1.6.1665.1 I 0.509
GPUH_0001539601 Gongylonema pulchrum GPUH_0001539601 N 0.509
GPUH_0001272801 Gongylonema pulchrum GPUH_0001272801 N 0.509
DME_0000779601 Dracunculus medinensis DME_0000779601 N 0.507
L898_g4830 Steinernema monticolum L898_g4830 N 0.507
SPAL_0001085700 Strongyloides papillosus SPAL_0001085700 N 0.507
L596_g28088 Steinernema carpocapsae L596_g28088 N 0.507
SVE_0954900 Strongyloides venezuelensis SVE_0954900 N 0.507
L893_g29974 Steinernema glaseri L893_g29974 N 0.507
PTRK_0001161700 Parastrongyloides trichosuri PTRK_0001161700 N 0.507
SSTP_0000585600 Strongyloides stercoralis SSTP_0000585600 N 0.507
L892_g19058 Steinernema scapterisci L892_g19058 N 0.507
L889_g9094 Steinernema feltiae L889_g9094 N 0.504
PPA02261 Pristionchus pacificus PPA02261 N 0.504
ANCDUO_26276 Ancylostoma duodenale ANCDUO_26276 N 0.504
scaffold164-EXSNAP2012.19 Pristionchus exspectatus scaffold164-EXSNAP2012.19 N 0.504
ASU_09087 Ascaris suum ASU_09087 N 0.503
ALUE_0000365901 Ascaris lumbricoides ALUE_0000365901 N 0.503
nDi.2.2.2.g07477 Dirofilaria immitis nDi.2.2.2.g07477 N 0.503
TCNE_0000332201 Toxocara canis TCNE_0000332201 N 0.503
L898_g7743 Steinernema monticolum L898_g7743 N 0.502
L893_g23503 Steinernema glaseri L893_g23503 N 0.502
L889_g16198 Steinernema feltiae L889_g16198 N 0.502
L892_g23618 Steinernema scapterisci L892_g23618 N 0.502
RSKR_0000269200 Rhabditophanes kr3021 RSKR_0000269200 N 0.501
nOo.2.0.1.g04693 Onchocerca ochengi nOo.2.0.1.g04693 N 0.500
nLs.2.1.2.g04082 Litomosoides sigmodontis nLs.2.1.2.g04082 N 0.500
LOAG_08062 Loa loa LOAG_08062 N 0.500
nAv.1.0.1.g08227 Acanthocheilonema viteae nAv.1.0.1.g08227 N 0.500
Bm8632 Brugia malayi Bm8632 N 0.500
nDi.2.2.2.g08508 Dirofilaria immitis nDi.2.2.2.g08508 N 0.500
WBGene00238628 Onchocerca volvulus WBGene00238628 N 0.500
L596_g16476 Steinernema carpocapsae L596_g16476 N 0.499
EEL_0000829801 Elaeophora elaphi EEL_0000829801 N 0.497
ANCCEY_04224 Ancylostoma ceylanicum ANCCEY_04224 N 0.497
ACAC_0000817201 Angiostrongylus cantonensis ACAC_0000817201 N 0.497
HPLM_0001324601 Haemonchus placei HPLM_0001324601 N 0.497
DICVIV_05502 Dictyocaulus viviparus DICVIV_05502 N 0.497
ANCDUO_12352 Ancylostoma duodenale ANCDUO_12352 N 0.497
HCOI01550200 Haemonchus contortus HCOI01550200 N 0.497
ACOC_0000235301 Angiostrongylus costaricensis ACOC_0000235301 N 0.497
LOAG_04347 Loa loa LOAG_04347 N 0.497
OFLC_0000770701 Onchocerca flexuosa OFLC_0000770701 N 0.497
OESDEN_09619 Oesophagostomum dentatum OESDEN_09619 N 0.497
NECAME_17555 Necator americanus NECAME_17555 N 0.497
NECAME_17981 Necator americanus NECAME_17981 N 0.497
nLs.2.1.2.g07238 Litomosoides sigmodontis nLs.2.1.2.g07238 N 0.497
NBR_0001277401 Nippostrongylus brasiliensis NBR_0001277401 N 0.497
Bm2524 Brugia malayi Bm2524 N 0.497
WUBG_03677 Wuchereria bancrofti WUBG_03677 N 0.497
nAv.1.0.1.g03971 Acanthocheilonema viteae nAv.1.0.1.g03971 N 0.497
TELCIR_02603 Teladorsagia circumcincta TELCIR_02603 N 0.497
ASIM_0001178701 Anisakis simplex ASIM_0001178701 N 0.496
TCNE_0001025901 Toxocara canis TCNE_0001025901 N 0.496
ASU_05994 Ascaris suum ASU_05994 N 0.496
SVE_0294800 Strongyloides venezuelensis SVE_0294800 N 0.492
SSTP_0001024100 Strongyloides stercoralis SSTP_0001024100 N 0.492
SPAL_0000986100 Strongyloides papillosus SPAL_0000986100 N 0.492
EVEC_0000171701 Enterobius vermicularis EVEC_0000171701 N 0.492
scaffold113-EXSNAP2012.49 Pristionchus exspectatus scaffold113-EXSNAP2012.49 N 0.490
Ppa-hmg-1.1 Pristionchus pacificus PPA22767 N 0.490
scaffold1425-EXSNAP2012.3 Pristionchus exspectatus scaffold1425-EXSNAP2012.3 N 0.490
RSKR_0000746900 Rhabditophanes kr3021 RSKR_0000746900 N 0.489
CJA04355 Caenorhabditis japonica CJA04355 N 0.488
PTRK_0001490800 Parastrongyloides trichosuri PTRK_0001490800 N 0.486
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I 0.485
SSLN_0000125101 Schistocephalus solidus SSLN_0000125101 N 0.485
HmN_000028000 Hymenolepis microstoma HmN_000028000 N 0.482
CRE11852 Caenorhabditis remanei CRE11852 N 0.481
nLs.2.1.2.g02941 Litomosoides sigmodontis nLs.2.1.2.g02941 N 0.480
nDi.2.2.2.g04713 Dirofilaria immitis nDi.2.2.2.g04713 N 0.480
hmg-1.1 Caenorhabditis elegans WBGene00001971 N 0.479
hmg-3 Caenorhabditis elegans WBGene00001973 N 0.478
SSTP_0000790100 Strongyloides stercoralis SSTP_0000790100 N 0.478
SVE_0536900 Strongyloides venezuelensis SVE_0536900 N 0.477
SPAL_0001421900 Strongyloides papillosus SPAL_0001421900 N 0.477
LOAG_14354 Loa loa LOAG_14354 N 0.473
DICVIV_01337 Dictyocaulus viviparus DICVIV_01337 N 0.472
TELCIR_22690 Teladorsagia circumcincta TELCIR_22690 N 0.472
TELCIR_05217 Teladorsagia circumcincta TELCIR_05217 N 0.472
SVUK_0001398701 Strongylus vulgaris SVUK_0001398701 N 0.472
HCOI00417600 Haemonchus contortus HCOI00417600 N 0.472
HPLM_0000803901 Haemonchus placei HPLM_0000803901 N 0.472
NBR_0001132501 Nippostrongylus brasiliensis NBR_0001132501 N 0.472
NECAME_10840 Necator americanus NECAME_10840 N 0.472
ANCDUO_11855 Ancylostoma duodenale ANCDUO_11855 N 0.472
ANCCEY_10464 Ancylostoma ceylanicum ANCCEY_10464 N 0.472
ANCCAN_21637 Ancylostoma caninum ANCCAN_21637 N 0.472
GG20749 Drosophila erecta FBgn0112936 I 0.470
GF11622 Drosophila ananassae FBgn0088662 I 0.470
GK15658 Drosophila willistoni FBgn0217663 I 0.470
GM15692 Drosophila sechellia FBgn0170608 I 0.470
GD25171 Drosophila simulans FBgn0196483 I 0.470
HmgZ Drosophila yakuba FBgn0068145 I 0.470
Bm6643 Brugia malayi Bm6643 N 0.470
TASK_0000475801 Taenia asiatica TASK_0000475801 N 0.470
HmgZ Drosophila melanogaster FBgn0010228 I 0.470
HNAJ_0000793101 Hymenolepis nana HNAJ_0000793101 I 0.469
OSTLU_18991 Ostreococcus lucimarinus OSTLU_18991 N 0.468
TriadG64155 Trichoplax adhaerens TriadG64155 I 0.466
HPBE_0002310801 Heligmosomoides bakeri HPBE_0002310801 N 0.466
PPAI002522 Phlebotomus papatasi PPAI002522 I 0.465
GJ20604 Drosophila virilis FBgn0207743 I 0.465
PTRK_0000111400 Parastrongyloides trichosuri PTRK_0000111400 N 0.465
GI20867 Drosophila mojavensis FBgn0143601 I 0.465
GH20784 Drosophila grimshawi FBgn0128247 I 0.465
ASU_07820 Ascaris suum ASU_07820 N 0.462
ANCCAN_04253 Ancylostoma caninum ANCCAN_04253 N 0.462
ALUE_0000605501 Ascaris lumbricoides ALUE_0000605501 N 0.462
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N 0.461
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N 0.461
SMUV_0000499601 Syphacia muris SMUV_0000499601 N 0.460
EVEC_0000079801 Enterobius vermicularis EVEC_0000079801 N 0.459
NEMVEDRAFT_v1g59568 Nematostella vectensis NEMVEDRAFT_v1g59568 N 0.459
MDOA014797 Musca domestica MDOA014797 I 0.459
TTAC_0000692101 Hydatigera taeniaeformis TTAC_0000692101 N 0.458
GA14726 Drosophila pseudoobscura FBgn0074753 I 0.457
GL17523 Drosophila persimilis FBgn0155126 I 0.457
L892_g2503 Steinernema scapterisci L892_g2503 N 0.456
L596_g8199 Steinernema carpocapsae L596_g8199 N 0.456
TCLT_0000097001 Thelazia callipaeda TCLT_0000097001 N 0.456
ACOC_0001190001 Angiostrongylus costaricensis ACOC_0001190001 N 0.453
ACAC_0000798501 Angiostrongylus cantonensis ACAC_0000798501 N 0.453
ALUE_0000448701 Ascaris lumbricoides ALUE_0000448701 N 0.450
HPBE_0001796801 Heligmosomoides bakeri HPBE_0001796801 N 0.450
ASU_05752 Ascaris suum ASU_05752 N 0.450
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.447
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.447
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.447
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.447
A1O9_00742 Exophiala aquamarina A1O9_00742 I 0.447
GM15859 Drosophila sechellia FBgn0170775 N 0.445
GK15924 Drosophila willistoni FBgn0217926 N 0.445
GA30453 Drosophila pseudoobscura FBgn0264590 N 0.445
GJ21748 Drosophila virilis FBgn0208866 N 0.445
GF13265 Drosophila ananassae FBgn0090297 N 0.445
HmgD Drosophila yakuba FBgn0068146 N 0.445
HmgD Drosophila melanogaster FBgn0004362 N 0.445
GG22136 Drosophila erecta FBgn0114310 N 0.445
GH21124 Drosophila grimshawi FBgn0128586 N 0.445
GI18728 Drosophila mojavensis FBgn0141467 N 0.445
GL16947 Drosophila persimilis FBgn0154551 N 0.445
GD11622 Drosophila simulans FBgn0183362 N 0.445
GM13209 Drosophila sechellia FBgn0168140 N 0.444
TsM_000111500 Taenia solium TsM_000111500 N 0.443
ASIM_0001147101 Anisakis simplex ASIM_0001147101 N 0.443
MCINX001064 Melitaea cinxia MCINX001064 I 0.442
BGIBMGA005289 Bombyx mori BGIBMGA005289 I 0.440
ASIM_0000156001 Anisakis simplex ASIM_0000156001 N 0.439
KGM_13852 Danaus plexippus KGM_13852 I 0.438
CapteG172235 Capitella teleta CapteG172235 I 0.437
RSKR_0000587700 Rhabditophanes kr3021 RSKR_0000587700 N 0.437
CLEC003860 Cimex lectularius CLEC003860 I 0.436
V499_08602 Pseudogymnoascus pannorum V499_08602 I 0.433
Bcin01g08840 Botrytis cinerea Bcin01g08840 I 0.433
GMDG_05273 Pseudogymnoascus destructans GMDG_05273 I 0.433
TCNE_0001783901 Toxocara canis TCNE_0001783901 N 0.432
ALUE_0001798401 Ascaris lumbricoides ALUE_0001798401 N 0.432
ASIM_0000114801 Anisakis simplex ASIM_0000114801 N 0.432
ASU_13985 Ascaris suum ASU_13985 N 0.432
csin108029 Clonorchis sinensis csin108029 N 0.431
T265_15460 Opisthorchis viverrini T265_15460 N 0.431
ANCDUO_24269 Ancylostoma duodenale ANCDUO_24269 N 0.431
ANCCAN_19939 Ancylostoma caninum ANCCAN_19939 N 0.431
EmuJ_000894800 Echinococcus multilocularis EmuJ_000894800 N 0.430
ECANG7_00770 Echinococcus canadensis ECANG7_00770 N 0.430
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.427
DME_0000590001 Dracunculus medinensis DME_0000590001 N 0.427
MDOA009531 Musca domestica MDOA009531 N 0.426
LCUP016801 Lucilia cuprina LCUP016801 N 0.426
SMUV_0000634201 Syphacia muris SMUV_0000634201 N 0.423
GPUH_0000029001 Gongylonema pulchrum GPUH_0000029001 N 0.423
gw1.20.66.1 Ostreococcus RCC809 gw1.20.66.1 N 0.423
SELMODRAFT_166865 Selaginella moellendorffii SELMODRAFT_166865 I 0.422
SELMODRAFT_159743 Selaginella moellendorffii SELMODRAFT_159743 I 0.422
Smp_148930 Schistosoma mansoni Smp_148930 N 0.420
SCUD_0000070901 Schistosoma curassoni SCUD_0000070901 N 0.420
L889_g6592 Steinernema feltiae L889_g6592 N 0.420
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.420
SMTD_0001155301 Schistosoma mattheei SMTD_0001155301 N 0.420
Sjc_0035580 Schistosoma japonicum Sjc_0035580 N 0.420
A_01848 Schistosoma haematobium A_01848 N 0.420
EVEC_0000195001 Enterobius vermicularis EVEC_0000195001 N 0.420
GL11071 Drosophila persimilis FBgn0148681 N 0.420
EMIHUDRAFT_49282 Emiliania huxleyi EMIHUDRAFT_49282 N 0.419
L596_g20063 Steinernema carpocapsae L596_g20063 N 0.418
MDOA007633 Musca domestica MDOA007633 N 0.418
SVUK_0001721701 Strongylus vulgaris SVUK_0001721701 N 0.418
GK22092 Drosophila willistoni FBgn0224077 N 0.418
AMAM007083 Anopheles maculatus AMAM007083 N 0.416
AFUN009599 Anopheles funestus AFUN009599 N 0.416
ADAC005122 Anopheles darlingi ADAC005122 N 0.416
AGAP012334 Anopheles gambiae AGAP012334 N 0.416
AARA003413 Anopheles arabiensis AARA003413 N 0.416
AALB010797 Anopheles albimanus AALB010797 N 0.416
AQUA002990 Anopheles quadriannulatus AQUA002990 N 0.416
AMEC017787 Anopheles melas AMEC017787 N 0.416
ACHR003270 Anopheles christyi ACHR003270 N 0.416
RSKR_0000269500 Rhabditophanes kr3021 RSKR_0000269500 N 0.416
ADIR000495 Anopheles dirus ADIR000495 N 0.416
ACOM026236 Anopheles coluzzii ACOM026236 N 0.416
AEPI002535 Anopheles epiroticus AEPI002535 N 0.416
A1O1_01197 Capronia coronata A1O1_01197 I 0.415
PV08_04655 Exophiala spinifera PV08_04655 I 0.415
G647_10093 Cladophialophora carrionii G647_10093 I 0.415
A1O3_08778 Capronia epimyces A1O3_08778 I 0.415
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.415
PV11_09703 Exophiala sideris PV11_09703 I 0.415
PV06_04154 Exophiala oligosperma PV06_04154 I 0.415
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.415
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.415
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.415