SVUK_0001721701 (Strongylus vulgaris)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 SVUK_0001721701 T337088_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0001721701-mRNA-1 Sox 167 217

Links

Other Sox family TFs
Other Strongylus vulgaris TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0001190001 Angiostrongylus costaricensis ACOC_0001190001 N 0.695
ACAC_0000798501 Angiostrongylus cantonensis ACAC_0000798501 N 0.695
ANCDUO_24269 Ancylostoma duodenale ANCDUO_24269 N 0.586
CBN04053 Caenorhabditis brenneri CBN04053 N 0.569
GPUH_0002275001 Gongylonema pulchrum GPUH_0002275001 N 0.559
WUBG_06999 Wuchereria bancrofti WUBG_06999 N 0.559
TCLT_0000071201 Thelazia callipaeda TCLT_0000071201 N 0.559
LOAG_08062 Loa loa LOAG_08062 N 0.559
TCNE_0000520101 Toxocara canis TCNE_0000520101 N 0.558
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N 0.558
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N 0.539
NECAME_16525 Necator americanus NECAME_16525 N 0.539
BTMF_0000420901 Brugia timori BTMF_0000420901 N 0.539
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N 0.539
ASIS014204 Anopheles sinensis ASIS014204 N 0.522
CBG20663 Caenorhabditis briggsae CBG20663 N 0.514
ENSCING00000000505 Ciona intestinalis ENSCING00000000505 I 0.512
fgenesh2_pg.scaffold_4000274 Monosiga brevicollis fgenesh2_pg.scaffold_4000274 N 0.496
HCOI01420700 Haemonchus contortus HCOI01420700 N 0.494
HCOI02106600 Haemonchus contortus HCOI02106600 N 0.494
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N 0.494
Sakowv30021656m.g Saccoglossus kowalevskii Sakowv30021656m.g N 0.487
PPA12247 Pristionchus pacificus PPA12247 N 0.467
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I 0.465
AAEL002381 Aedes aegypti AAEL002381 N 0.462
L889_g13720 Steinernema feltiae L889_g13720 N 0.458
scaffold593-EXSNAP2012.5 Pristionchus exspectatus scaffold593-EXSNAP2012.5 N 0.457
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N 0.455
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N 0.455
Minc04648 Meloidogyne incognita Minc04648 N 0.455
Minc03634 Meloidogyne incognita Minc03634 N 0.455
CBG09136 Caenorhabditis briggsae CBG09136 N 0.454
WBGene00237022 Onchocerca volvulus WBGene00237022 N 0.446
BTMF_0000229601 Brugia timori BTMF_0000229601 N 0.446
PDK_20s1781371g001 Phoenix dactylifera PDK_20s1781371g001 I 0.445
PNEG_03347 Pneumocystis murina PNEG_03347 I 0.442
fgeneshCV_pg.C_scaffold_18000199 Chlorella vulgaris fgeneshCV_pg.C_scaffold_18000199 N 0.440
fgenesh1_pg.18_#_36 Coccomyxa subellipsoidea C169 fgenesh1_pg.18_#_36 N 0.440
OESDEN_18796 Oesophagostomum dentatum OESDEN_18796 N 0.439
SNAPOd2T00002710001 Oikopleura dioica SNAPOd2T00002710001 I 0.439
GRMZM2G046829 Zea mays GRMZM2G046829 I 0.439
GPUH_0000029001 Gongylonema pulchrum GPUH_0000029001 N 0.437
GSMUA_Achr5G23610_001 Musa acuminata GSMUA_Achr5G23610_001 I 0.437
OFLC_0000496201 Onchocerca flexuosa OFLC_0000496201 N 0.436
DME_0000590001 Dracunculus medinensis DME_0000590001 N 0.435
ANCCAN_19939 Ancylostoma caninum ANCCAN_19939 N 0.435
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.435
PRUPE_ppa023883mg Prunus persica PRUPE_ppa023883mg I 0.431
Pm006709 Prunus mume Pm006709 I 0.431
mgf023167m Mimulus guttatus mgf023167m I 0.431
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.429
CBN25379 Caenorhabditis brenneri CBN25379 I 0.429
CGOC_0001226701 Cylicostephanus goldi CGOC_0001226701 N 0.428
TELCIR_25179 Teladorsagia circumcincta TELCIR_25179 N 0.428
TELCIR_19210 Teladorsagia circumcincta TELCIR_19210 N 0.428
TriadG64155 Trichoplax adhaerens TriadG64155 I 0.423
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.420
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.419
hmg-4 Caenorhabditis elegans WBGene00001974 N 0.418
CRE03995 Caenorhabditis remanei CRE03995 N 0.418
L889_g29516 Steinernema feltiae L889_g29516 N 0.415
ARB_06161 Arthroderma benhamiae ARB_06161 N 0.415