estExt_Genewise1.C_510099 (Volvox carteri)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_Genewise1.C_510099 T334066_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_510099 Sox 555 623

Links

Other Sox family TFs
Other Volvox carteri TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.518
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.430
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.471
Aquca_002_00505 Aquilegia coerulea Aquca_002_00505 I 0.505
mgf001267m Mimulus guttatus mgf001267m I 0.435
gw1.204.1.1 Dictyostelium purpureum gw1.204.1.1 I 0.442
estExt_fgeneshDP_kg.C_1050006 Dictyostelium purpureum estExt_fgeneshDP_kg.C_1050006 I 0.446
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.428
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.539
29822.m003476 Ricinus communis 29822.m003476 I 0.547
Pm015842 Prunus mume Pm015842 I 0.467
Cla017295 Citrullus lanatus Cla017295 I 0.428
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.430
Ciclev10011266m.g Citrus clementina Ciclev10011266m.g I 0.418
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.422
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.501
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.422
PK18077.1 Cannabis sativa PK18077.1 I 0.430
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.426
orange1.1g006512m.g Citrus sinensis orange1.1g006512m.g I 0.418
MDP0000310093 Malus domestica MDP0000310093 I 0.463
MDP0000301546 Malus domestica MDP0000301546 I 0.446
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.434
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.434
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.501
Ca_12487 Cicer arietinum Ca_12487 I 0.422
Ca_10804 Cicer arietinum Ca_10804 I 0.422
ATHMG Vitis vinifera VIT_14s0108g00040 I 0.424
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.455
SSRP1 Arabidopsis thaliana AT3G28730 I 0.430
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.419
MDP0000828844 Malus domestica MDP0000828844 I 0.466
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.484
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.466
O9G_002262 Rozella allomycis O9G_002262 I 0.422
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.509
SOCG_02294 Schizosaccharomyces octosporus SOCG_02294 I 0.424
TCM_018380 Theobroma cacao TCM_018380 I 0.467
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.496
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.509
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.460
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.467
Si003021m.g Setaria italica Si003021m.g N 0.419
CHLREDRAFT_189879 Chlamydomonas reinhardtii CHLREDRAFT_189879 N 0.458
CHLREDRAFT_142283 Chlamydomonas reinhardtii CHLREDRAFT_142283 N 0.613
gw.283.36.1 Branchiostoma floridae gw.283.36.1 N 0.428
Bra033055 Brassica rapa Bra033055 N 0.534
BOTBODRAFT_30512 Botryobasidium botryosum BOTBODRAFT_30512 N 0.478
GLYMA03G03771 Glycine max GLYMA03G03771 N 0.422
Lus10042065.g Linum usitatissimum Lus10042065.g N 0.432
gw.77.73.1 Branchiostoma floridae gw.77.73.1 N 0.428
OSTLU_19125 Ostreococcus lucimarinus OSTLU_19125 N 0.429
estExt_Genewise1.C_10428 Volvox carteri estExt_Genewise1.C_10428 N 0.608
K437DRAFT_218621 Tilletiaria anomala K437DRAFT_218621 N 0.415
gw1.32.10.1 Bigelowiella natans gw1.32.10.1 N 0.485
GUITHDRAFT_115609 Guillardia theta GUITHDRAFT_115609 N 0.454
GUITHDRAFT_114564 Guillardia theta GUITHDRAFT_114564 N 0.458
Lus10018073.g Linum usitatissimum Lus10018073.g N 0.432
GUITHDRAFT_76406 Guillardia theta GUITHDRAFT_76406 N 0.458