SMU15029818 (Schmidtea mediterranea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 SMU15029818 T335025_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NCU02819
M02490_2.00
Neurospora crassa
NNHNNNNNRN

NYNNNNNDNN
PBM
Weirauch et al.(2014)
pTH9672
0.428 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15029818 Sox 81 149

Links

Other Sox family TFs
Other Schmidtea mediterranea TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NCU02819 Neurospora crassa NCU02819 D 0.428
MCINX005468 Melitaea cinxia MCINX005468 I 0.622
TTRE_0000401801 Trichuris trichiura TTRE_0000401801 I 0.629
TC012723 Tribolium castaneum TC012723 I 0.622
ASTEI07799 Anopheles stephensi ASTEI07799 I 0.622
ASIS016667 Anopheles sinensis ASIS016667 I 0.622
AMEM006878 Anopheles merus AMEM006878 I 0.622
ENSXMAG00000000362 Xiphophorus maculatus ENSXMAG00000000362 I 0.656
AMEC012857 Anopheles melas AMEC012857 I 0.622
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.428
ENSGMOG00000015161 Gadus morhua ENSGMOG00000015161 I 0.604
ACUA004409 Anopheles culicifacies ACUA004409 I 0.622
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.428
SAPIO_CDS3355 Scedosporium apiospermum SAPIO_CDS3355 I 0.454
BTMF_0001006201 Brugia timori BTMF_0001006201 I 0.548
LotgiG109021 Lottia gigantea LotgiG109021 I 0.622
NV10488 Nasonia vitripennis NV10488 I 0.622
O9G_002262 Rozella allomycis O9G_002262 I 0.441
ISCW018867 Ixodes scapularis ISCW018867 I 0.622
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.428
HMEL005034 Heliconius melpomene HMEL005034 I 0.622
PODANS_1_7390 Podospora anserina PODANS_1_7390 I 0.420
GSTUM_00011974001 Tuber melanosporum GSTUM_00011974001 I 0.420
GB43084 Apis mellifera GB43084 I 0.614
RPRC000650 Rhodnius prolixus RPRC000650 I 0.622
ENSGGOG00000025016 Gorilla gorilla ENSGGOG00000025016 I 0.622
tox4a Gasterosteus aculeatus ENSGACG00000014107 I 0.622
CTHT_0053790 Chaetomium thermophilum CTHT_0053790 I 0.415
AALB006415 Anopheles albimanus AALB006415 I 0.622
CGI_10017717 Crassostrea gigas CGI_10017717 I 0.622
AFAF011136 Anopheles farauti AFAF011136 I 0.622
AOL_s00076g81 Arthrobotrys oligospora AOL_s00076g81 I 0.448
AGAP000281 Anopheles gambiae AGAP000281 I 0.622
ADAC003252 Anopheles darlingi ADAC003252 I 0.622
ACYPI005775 Acyrthosiphon pisum ACYPI005775 I 0.622
ACEP19638 Atta cephalotes ACEP19638 I 0.560
TMUE_s0011001600 Trichuris muris TMUE_s0011001600 I 0.629
RO3G_16060 Rhizopus oryzae RO3G_16060 I 0.427
RO3G_09728 Rhizopus oryzae RO3G_09728 I 0.418
RO3G_07013 Rhizopus oryzae RO3G_07013 I 0.426
tox4.S Xenopus laevis XB-GENE-993810 I 0.622
BGIBMGA006848 Bombyx mori BGIBMGA006848 I 0.622
DAPPUDRAFT_19853 Daphnia pulex DAPPUDRAFT_19853 I 0.622
AARA010616 Anopheles arabiensis AARA010616 I 0.622
CLEC001918 Cimex lectularius CLEC001918 I 0.622
HHAL000823-PA Halyomorpha halys HHAL000823-PA I 0.622
AATE016215 Anopheles atroparvus AATE016215 I 0.622
KGM_14572 Danaus plexippus KGM_14572 I 0.622
tox4b Danio rerio ENSDARG00000100163 I 0.622
DRE_06603 Drechslerella stenobrocha DRE_06603 I 0.448
Ocbimv22012197m.g Octopus bimaculoides Ocbimv22012197m.g I 0.656
AEPI010254 Anopheles epiroticus AEPI010254 N 0.489
ACAC_0000973801 Angiostrongylus cantonensis ACAC_0000973801 N 0.422
AFUN005717 Anopheles funestus AFUN005717 N 0.487
AMAM014030 Anopheles maculatus AMAM014030 N 0.489
MDOA008605 Musca domestica MDOA008605 N 0.513
AMIN005634 Anopheles minimus AMIN005634 N 0.489
XP_002936155 Xenopus tropicalis XP_002936155 N 0.588
BGLB005856 Biomphalaria glabrata BGLB005856 N 0.426
BGLB012439 Biomphalaria glabrata BGLB012439 N 0.426
ALUE_0000699101 Ascaris lumbricoides ALUE_0000699101 N 0.455
ANCCAN_09463 Ancylostoma caninum ANCCAN_09463 N 0.422
nDi.2.2.2.g11099 Dirofilaria immitis nDi.2.2.2.g11099 N 0.610
NECAME_01599 Necator americanus NECAME_01599 N 0.422
nLs.2.1.2.g04689 Litomosoides sigmodontis nLs.2.1.2.g04689 N 0.581
nOo.2.0.1.g12207 Onchocerca ochengi nOo.2.0.1.g12207 N 0.591
nRc.2.0.1.g42996 Romanomermis culicivorax nRc.2.0.1.g42996 N 0.622
OESDEN_01314 Oesophagostomum dentatum OESDEN_01314 N 0.422
OFLC_0001222801 Onchocerca flexuosa OFLC_0001222801 N 0.591
RSKR_0000620800 Rhabditophanes kr3021 RSKR_0000620800 N 0.428
scaffold517-EXSNAP2012.7 Pristionchus exspectatus scaffold517-EXSNAP2012.7 N 0.422
SVUK_0000363901 Strongylus vulgaris SVUK_0000363901 N 0.422
TCLT_0000844001 Thelazia callipaeda TCLT_0000844001 N 0.495
TCNE_0000652201 Toxocara canis TCNE_0000652201 N 0.455
TELCIR_16246 Teladorsagia circumcincta TELCIR_16246 N 0.422
TMUE_s0009009400 Trichuris muris TMUE_s0009009400 N 0.600
L889_g13125 Steinernema feltiae L889_g13125 N 0.422
HCOI01215700 Haemonchus contortus HCOI01215700 N 0.422
ANCCEY_15064 Ancylostoma ceylanicum ANCCEY_15064 N 0.422
ANCCEY_15918 Ancylostoma ceylanicum ANCCEY_15918 N 0.422
ANCDUO_06783 Ancylostoma duodenale ANCDUO_06783 N 0.422
ASIM_0001958001 Anisakis simplex ASIM_0001958001 N 0.526
ASU_00726 Ascaris suum ASU_00726 N 0.455
nAv.1.0.1.g02116 Acanthocheilonema viteae nAv.1.0.1.g02116 N 0.610
D917_02150 Trichinella nativa D917_02150 N 0.579
D918_03887 Trichuris suis D918_03887 N 0.496
D918_09264 Trichuris suis D918_09264 N 0.600
DICVIV_00270 Dictyocaulus viviparus DICVIV_00270 N 0.422
DME_0000632401 Dracunculus medinensis DME_0000632401 N 0.455
EEL_0000223401 Elaeophora elaphi EEL_0000223401 N 0.612
GPUH_0000021901 Gongylonema pulchrum GPUH_0000021901 N 0.610
HCOI00076900 Haemonchus contortus HCOI00076900 N 0.422
TTRE_0000108401 Trichuris trichiura TTRE_0000108401 N 0.600
CpipJ_CPIJ003178 Culex pipiens CpipJ_CPIJ003178 N 0.489
tox2 Oryzias latipes ENSORLG00000004818 N 0.588
tox4b Oryzias latipes ENSORLG00000008779 N 0.588
ENSPFOG00000002336 Poecilia formosa ENSPFOG00000002336 N 0.561
ENSPFOG00000008402 Poecilia formosa ENSPFOG00000008402 N 0.588
Hmgb1 Rattus norvegicus ENSRNOG00000029813 N 0.447
TOX2 Sorex araneus ENSSARG00000001080 N 0.455
ENSSSCG00000023554 Sus scrofa ENSSSCG00000023554 N 0.588
ENSTGUG00000003811 Taeniopygia guttata ENSTGUG00000003811 N 0.588
ENSTGUG00000014902 Taeniopygia guttata ENSTGUG00000014902 N 0.455
tox4b Tetraodon nigroviridis ENSTNIG00000003691 N 0.588
tox2 Tetraodon nigroviridis ENSTNIG00000005683 N 0.588
ENSONIG00000016627 Oreochromis niloticus ENSONIG00000016627 N 0.588
ENSONIG00000000284 Oreochromis niloticus ENSONIG00000000284 N 0.588
ENSMMUG00000014077 Macaca mulatta ENSMMUG00000014077 N 0.561
RO3G_05222 Rhizopus oryzae RO3G_05222 N 0.436
WUBG_03914 Wuchereria bancrofti WUBG_03914 N 0.610
Bm4188 Brugia malayi Bm4188 N 0.610
CPIJ003178 Culex quinquefasciatus CPIJ003178 N 0.489
EFV61455 Trichinella spiralis EFV61455 N 0.579
ENSAPLG00000003986 Anas platyrhynchos ENSAPLG00000003986 N 0.455
ENSCING00000009516 Ciona intestinalis ENSCING00000009516 N 0.574
ENSCSAVG00000009270 Ciona savignyi ENSCSAVG00000009270 N 0.570
tox2 Gasterosteus aculeatus ENSGACG00000006914 N 0.588
ENSGMOG00000008081 Gadus morhua ENSGMOG00000008081 N 0.588
ENSGMOG00000013406 Gadus morhua ENSGMOG00000013406 N 0.576
tox4b Takifugu rubripes ENSTRUG00000002594 N 0.588
tox2 Takifugu rubripes ENSTRUG00000013848 N 0.588
WBGene00236865 Onchocerca volvulus WBGene00236865 N 0.591
EDI_340970 Entamoeba dispar EDI_340970 N 0.432
Cflo_00230--XP_624018.2_APIME Camponotus floridanus Cflo_00230--XP_624018.2_APIME N 0.622
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N 0.462
Hsal_06265--XP_624018.2_APIME Harpegnathos saltator Hsal_06265--XP_624018.2_APIME N 0.455
Myotis_brandtii_DAP3_10031965 Myotis brandtii Myotis_brandtii_DAP3_10031965 N 0.419
fgenesh2_pg.scaffold_177000008 Branchiostoma floridae fgenesh2_pg.scaffold_177000008 N 0.588
fgenesh2_pg.scaffold_19000069 Branchiostoma floridae fgenesh2_pg.scaffold_19000069 N 0.588
Sakowv30024549m.g Saccoglossus kowalevskii Sakowv30024549m.g N 0.610
Eucgr.I01920 Eucalyptus grandis Eucgr.I01920 N 0.536
LCUP006200 Lucilia cuprina LCUP006200 N 0.557
TTHERM_00216040 Tetrahymena thermophila TTHERM_00216040 N 0.487
Traes_6DS_C7F653F0F Triticum aestivum Traes_6DS_C7F653F0F N 0.427
EFV52201 Trichinella spiralis EFV52201 N 0.523
ENSXMAG00000016763 Xiphophorus maculatus ENSXMAG00000016763 N 0.588
F775_20402 Aegilops tauschii F775_20402 N 0.427
HelroG145107 Helobdella robusta HelroG145107 N 0.547
ISCW015985 Ixodes scapularis ISCW015985 N 0.610
L798_00437 Zootermopsis nevadensis L798_00437 N 0.489
LOAG_18151 Loa loa LOAG_18151 N 0.610
MESCA003479 Megaselia scalaris MESCA003479 N 0.443
PHUM393920 Pediculus humanus PHUM393920 N 0.427
SPU_002060 Strongylocentrotus purpuratus SPU_002060 N 0.610
tetur31g00660 Tetranychus urticae tetur31g00660 N 0.452
tetur31g00840 Tetranychus urticae tetur31g00840 N 0.452
tetur31g01070 Tetranychus urticae tetur31g01070 N 0.440