CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMU15029818
(
Schmidtea mediterranea
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
SMU15029818
T335025_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU02819
M02490_2.00
Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN
PBM
Weirauch et al.(2014)
pTH9672
0.428
0.377
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15029818
Sox
81
149
IQKPVSAYALFFRDKQFQIKSDYPDYSFGEVSKMVAKLWDALNFNEKLTYKMKTEAAKKAYLKELARYK
Links
Other
Sox
family TFs
Other
Schmidtea mediterranea
TFs
147 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSXMAG00000000362
Xiphophorus maculatus
ENSXMAG00000000362
I
0.656
Ocbimv22012197m.g
Octopus bimaculoides
Ocbimv22012197m.g
I
0.656
TMUE_s0011001600
Trichuris muris
TMUE_s0011001600
I
0.629
TTRE_0000401801
Trichuris trichiura
TTRE_0000401801
I
0.629
ASIS016667
Anopheles sinensis
ASIS016667
I
0.622
AFAF011136
Anopheles farauti
AFAF011136
I
0.622
TC012723
Tribolium castaneum
TC012723
I
0.622
AATE016215
Anopheles atroparvus
AATE016215
I
0.622
tox4a
Gasterosteus aculeatus
ENSGACG00000014107
I
0.622
ENSGGOG00000025016
Gorilla gorilla
ENSGGOG00000025016
I
0.622
AARA010616
Anopheles arabiensis
AARA010616
I
0.622
RPRC000650
Rhodnius prolixus
RPRC000650
I
0.622
ACUA004409
Anopheles culicifacies
ACUA004409
I
0.622
NV10488
Nasonia vitripennis
NV10488
I
0.622
HMEL005034
Heliconius melpomene
HMEL005034
I
0.622
ISCW018867
Ixodes scapularis
ISCW018867
I
0.622
KGM_14572
Danaus plexippus
KGM_14572
I
0.622
LotgiG109021
Lottia gigantea
LotgiG109021
I
0.622
MCINX005468
Melitaea cinxia
MCINX005468
I
0.622
AALB006415
Anopheles albimanus
AALB006415
I
0.622
nRc.2.0.1.g42996
Romanomermis culicivorax
nRc.2.0.1.g42996
N
0.622
AMEC012857
Anopheles melas
AMEC012857
I
0.622
AMEM006878
Anopheles merus
AMEM006878
I
0.622
Cflo_00230--XP_624018.2_APIME
Camponotus floridanus
Cflo_00230--XP_624018.2_APIME
N
0.622
AGAP000281
Anopheles gambiae
AGAP000281
I
0.622
tox4.S
Xenopus laevis
XB-GENE-993810
I
0.622
CLEC001918
Cimex lectularius
CLEC001918
I
0.622
BGIBMGA006848
Bombyx mori
BGIBMGA006848
I
0.622
tox4b
Danio rerio
ENSDARG00000100163
I
0.622
DAPPUDRAFT_19853
Daphnia pulex
DAPPUDRAFT_19853
I
0.622
ADAC003252
Anopheles darlingi
ADAC003252
I
0.622
ASTEI07799
Anopheles stephensi
ASTEI07799
I
0.622
CGI_10017717
Crassostrea gigas
CGI_10017717
I
0.622
HHAL000823-PA
Halyomorpha halys
HHAL000823-PA
I
0.622
ACYPI005775
Acyrthosiphon pisum
ACYPI005775
I
0.622
GB43084
Apis mellifera
GB43084
I
0.614
EEL_0000223401
Elaeophora elaphi
EEL_0000223401
N
0.612
ISCW015985
Ixodes scapularis
ISCW015985
N
0.610
WUBG_03914
Wuchereria bancrofti
WUBG_03914
N
0.610
Bm4188
Brugia malayi
Bm4188
N
0.610
Sakowv30024549m.g
Saccoglossus kowalevskii
Sakowv30024549m.g
N
0.610
GPUH_0000021901
Gongylonema pulchrum
GPUH_0000021901
N
0.610
LOAG_18151
Loa loa
LOAG_18151
N
0.610
nDi.2.2.2.g11099
Dirofilaria immitis
nDi.2.2.2.g11099
N
0.610
SPU_002060
Strongylocentrotus purpuratus
SPU_002060
N
0.610
nAv.1.0.1.g02116
Acanthocheilonema viteae
nAv.1.0.1.g02116
N
0.610
ENSGMOG00000015161
Gadus morhua
ENSGMOG00000015161
I
0.604
D918_09264
Trichuris suis
D918_09264
N
0.600
TTRE_0000108401
Trichuris trichiura
TTRE_0000108401
N
0.600
TMUE_s0009009400
Trichuris muris
TMUE_s0009009400
N
0.600
WBGene00236865
Onchocerca volvulus
WBGene00236865
N
0.591
OFLC_0001222801
Onchocerca flexuosa
OFLC_0001222801
N
0.591
nOo.2.0.1.g12207
Onchocerca ochengi
nOo.2.0.1.g12207
N
0.591
fgenesh2_pg.scaffold_19000069
Branchiostoma floridae
fgenesh2_pg.scaffold_19000069
N
0.588
XP_002936155
Xenopus tropicalis
XP_002936155
N
0.588
fgenesh2_pg.scaffold_177000008
Branchiostoma floridae
fgenesh2_pg.scaffold_177000008
N
0.588
tox2
Takifugu rubripes
ENSTRUG00000013848
N
0.588
tox4b
Oryzias latipes
ENSORLG00000008779
N
0.588
ENSPFOG00000008402
Poecilia formosa
ENSPFOG00000008402
N
0.588
ENSSSCG00000023554
Sus scrofa
ENSSSCG00000023554
N
0.588
ENSONIG00000016627
Oreochromis niloticus
ENSONIG00000016627
N
0.588
ENSONIG00000000284
Oreochromis niloticus
ENSONIG00000000284
N
0.588
tox2
Gasterosteus aculeatus
ENSGACG00000006914
N
0.588
ENSGMOG00000008081
Gadus morhua
ENSGMOG00000008081
N
0.588
ENSTGUG00000003811
Taeniopygia guttata
ENSTGUG00000003811
N
0.588
tox2
Oryzias latipes
ENSORLG00000004818
N
0.588
tox4b
Takifugu rubripes
ENSTRUG00000002594
N
0.588
ENSXMAG00000016763
Xiphophorus maculatus
ENSXMAG00000016763
N
0.588
tox4b
Tetraodon nigroviridis
ENSTNIG00000003691
N
0.588
tox2
Tetraodon nigroviridis
ENSTNIG00000005683
N
0.588
nLs.2.1.2.g04689
Litomosoides sigmodontis
nLs.2.1.2.g04689
N
0.581
EFV61455
Trichinella spiralis
EFV61455
N
0.579
D917_02150
Trichinella nativa
D917_02150
N
0.579
ENSGMOG00000013406
Gadus morhua
ENSGMOG00000013406
N
0.576
ENSCING00000009516
Ciona intestinalis
ENSCING00000009516
N
0.574
ENSCSAVG00000009270
Ciona savignyi
ENSCSAVG00000009270
N
0.570
ENSMMUG00000014077
Macaca mulatta
ENSMMUG00000014077
N
0.561
ENSPFOG00000002336
Poecilia formosa
ENSPFOG00000002336
N
0.561
ACEP19638
Atta cephalotes
ACEP19638
I
0.560
LCUP006200
Lucilia cuprina
LCUP006200
N
0.557
BTMF_0001006201
Brugia timori
BTMF_0001006201
I
0.548
HelroG145107
Helobdella robusta
HelroG145107
N
0.547
Eucgr.I01920
Eucalyptus grandis
Eucgr.I01920
N
0.536
ASIM_0001958001
Anisakis simplex
ASIM_0001958001
N
0.526
EFV52201
Trichinella spiralis
EFV52201
N
0.523
MDOA008605
Musca domestica
MDOA008605
N
0.513
D918_03887
Trichuris suis
D918_03887
N
0.496
TCLT_0000844001
Thelazia callipaeda
TCLT_0000844001
N
0.495
AMIN005634
Anopheles minimus
AMIN005634
N
0.489
AMAM014030
Anopheles maculatus
AMAM014030
N
0.489
AEPI010254
Anopheles epiroticus
AEPI010254
N
0.489
L798_00437
Zootermopsis nevadensis
L798_00437
N
0.489
CPIJ003178
Culex quinquefasciatus
CPIJ003178
N
0.489
CpipJ_CPIJ003178
Culex pipiens
CpipJ_CPIJ003178
N
0.489
AFUN005717
Anopheles funestus
AFUN005717
N
0.487
TTHERM_00216040
Tetrahymena thermophila
TTHERM_00216040
N
0.487
ENSMMUP00000034886
Macaca fascicularis
ENSMMUP00000034886
N
0.462
ENSTGUG00000014902
Taeniopygia guttata
ENSTGUG00000014902
N
0.455
TOX2
Sorex araneus
ENSSARG00000001080
N
0.455
TCNE_0000652201
Toxocara canis
TCNE_0000652201
N
0.455
DME_0000632401
Dracunculus medinensis
DME_0000632401
N
0.455
ENSAPLG00000003986
Anas platyrhynchos
ENSAPLG00000003986
N
0.455
ASU_00726
Ascaris suum
ASU_00726
N
0.455
ALUE_0000699101
Ascaris lumbricoides
ALUE_0000699101
N
0.455
Hsal_06265--XP_624018.2_APIME
Harpegnathos saltator
Hsal_06265--XP_624018.2_APIME
N
0.455
SAPIO_CDS3355
Scedosporium apiospermum
SAPIO_CDS3355
I
0.454
tetur31g00840
Tetranychus urticae
tetur31g00840
N
0.452
tetur31g00660
Tetranychus urticae
tetur31g00660
N
0.452
DRE_06603
Drechslerella stenobrocha
DRE_06603
I
0.448
AOL_s00076g81
Arthrobotrys oligospora
AOL_s00076g81
I
0.448
Hmgb1
Rattus norvegicus
ENSRNOG00000029813
N
0.447
MESCA003479
Megaselia scalaris
MESCA003479
N
0.443
O9G_002262
Rozella allomycis
O9G_002262
I
0.441
tetur31g01070
Tetranychus urticae
tetur31g01070
N
0.440
RO3G_05222
Rhizopus oryzae
RO3G_05222
N
0.436
EDI_340970
Entamoeba dispar
EDI_340970
N
0.432
estExt_fgenesh3_kg.C_40082
Neurospora discreta
estExt_fgenesh3_kg.C_40082
I
0.428
RSKR_0000620800
Rhabditophanes kr3021
RSKR_0000620800
N
0.428
NCU02819
Neurospora crassa
NCU02819
D
0.428
NEUTE1DRAFT_106544
Neurospora tetrasperma
NEUTE1DRAFT_106544
I
0.428
SMAC_00615
Sordaria macrospora
SMAC_00615
I
0.428
F775_20402
Aegilops tauschii
F775_20402
N
0.427
RO3G_16060
Rhizopus oryzae
RO3G_16060
I
0.427
Traes_6DS_C7F653F0F
Triticum aestivum
Traes_6DS_C7F653F0F
N
0.427
PHUM393920
Pediculus humanus
PHUM393920
N
0.427
BGLB012439
Biomphalaria glabrata
BGLB012439
N
0.426
BGLB005856
Biomphalaria glabrata
BGLB005856
N
0.426
RO3G_07013
Rhizopus oryzae
RO3G_07013
I
0.426
ANCCEY_15064
Ancylostoma ceylanicum
ANCCEY_15064
N
0.422
scaffold517-EXSNAP2012.7
Pristionchus exspectatus
scaffold517-EXSNAP2012.7
N
0.422
SVUK_0000363901
Strongylus vulgaris
SVUK_0000363901
N
0.422
TELCIR_16246
Teladorsagia circumcincta
TELCIR_16246
N
0.422
ANCDUO_06783
Ancylostoma duodenale
ANCDUO_06783
N
0.422
DICVIV_00270
Dictyocaulus viviparus
DICVIV_00270
N
0.422
ACAC_0000973801
Angiostrongylus cantonensis
ACAC_0000973801
N
0.422
OESDEN_01314
Oesophagostomum dentatum
OESDEN_01314
N
0.422
L889_g13125
Steinernema feltiae
L889_g13125
N
0.422
HCOI01215700
Haemonchus contortus
HCOI01215700
N
0.422
HCOI00076900
Haemonchus contortus
HCOI00076900
N
0.422
ANCCEY_15918
Ancylostoma ceylanicum
ANCCEY_15918
N
0.422
NECAME_01599
Necator americanus
NECAME_01599
N
0.422
ANCCAN_09463
Ancylostoma caninum
ANCCAN_09463
N
0.422
PODANS_1_7390
Podospora anserina
PODANS_1_7390
I
0.420
GSTUM_00011974001
Tuber melanosporum
GSTUM_00011974001
I
0.420
Myotis_brandtii_DAP3_10031965
Myotis brandtii
Myotis_brandtii_DAP3_10031965
N
0.419
RO3G_09728
Rhizopus oryzae
RO3G_09728
I
0.418
CTHT_0053790
Chaetomium thermophilum
CTHT_0053790
I
0.415