CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TTRE_0000401801
(
Trichuris trichiura
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
TTRE_0000401801
T337269_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU02819
M02490_2.00
Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN
PBM
Weirauch et al.(2014)
pTH9672
0.425
0.362
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TTRE_0000401801
Sox
256
324
PQKPVSAYALFFRDTQATIKGQNPNASFGEVSKIVATMWDGLNSDAKNVYKQKTESAKKDYLKQLAAYR
Links
Other
Sox
family TFs
Other
Trichuris trichiura
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TMUE_s0011001600
Trichuris muris
TMUE_s0011001600
I
0.741
AFAF011136
Anopheles farauti
AFAF011136
I
0.732
RPRC000650
Rhodnius prolixus
RPRC000650
I
0.732
AATE016215
Anopheles atroparvus
AATE016215
I
0.732
AARA010616
Anopheles arabiensis
AARA010616
I
0.732
AMEC012857
Anopheles melas
AMEC012857
I
0.732
ASIS016667
Anopheles sinensis
ASIS016667
I
0.732
ISCW018867
Ixodes scapularis
ISCW018867
I
0.732
HHAL000823-PA
Halyomorpha halys
HHAL000823-PA
I
0.732
ASTEI07799
Anopheles stephensi
ASTEI07799
I
0.732
AALB006415
Anopheles albimanus
AALB006415
I
0.732
AMEM006878
Anopheles merus
AMEM006878
I
0.732
ACUA004409
Anopheles culicifacies
ACUA004409
I
0.732
CLEC001918
Cimex lectularius
CLEC001918
I
0.732
AGAP000281
Anopheles gambiae
AGAP000281
I
0.732
ADAC003252
Anopheles darlingi
ADAC003252
I
0.732
ACYPI005775
Acyrthosiphon pisum
ACYPI005775
I
0.728
TMUE_s0009009400
Trichuris muris
TMUE_s0009009400
N
0.706
D918_09264
Trichuris suis
D918_09264
N
0.706
TTRE_0000108401
Trichuris trichiura
TTRE_0000108401
N
0.706
tox4a
Gasterosteus aculeatus
ENSGACG00000014107
I
0.705
NV10488
Nasonia vitripennis
NV10488
I
0.705
KGM_14572
Danaus plexippus
KGM_14572
I
0.705
DAPPUDRAFT_19853
Daphnia pulex
DAPPUDRAFT_19853
I
0.705
TC012723
Tribolium castaneum
TC012723
I
0.705
HMEL005034
Heliconius melpomene
HMEL005034
I
0.705
BGIBMGA006848
Bombyx mori
BGIBMGA006848
I
0.705
MCINX005468
Melitaea cinxia
MCINX005468
I
0.705
CGI_10017717
Crassostrea gigas
CGI_10017717
I
0.703
LotgiG109021
Lottia gigantea
LotgiG109021
I
0.701
tox4b
Tetraodon nigroviridis
ENSTNIG00000003691
N
0.698
tox4b
Oryzias latipes
ENSORLG00000008779
N
0.698
tox4b
Takifugu rubripes
ENSTRUG00000002594
N
0.698
ENSONIG00000000284
Oreochromis niloticus
ENSONIG00000000284
N
0.698
GB43084
Apis mellifera
GB43084
I
0.697
Sakowv30024549m.g
Saccoglossus kowalevskii
Sakowv30024549m.g
N
0.693
ISCW015985
Ixodes scapularis
ISCW015985
N
0.693
nRc.2.0.1.g42996
Romanomermis culicivorax
nRc.2.0.1.g42996
N
0.691
ENSGMOG00000015161
Gadus morhua
ENSGMOG00000015161
I
0.687
SPU_002060
Strongylocentrotus purpuratus
SPU_002060
N
0.686
D917_02150
Trichinella nativa
D917_02150
N
0.685
EFV61455
Trichinella spiralis
EFV61455
N
0.685
nAv.1.0.1.g02116
Acanthocheilonema viteae
nAv.1.0.1.g02116
N
0.677
nDi.2.2.2.g11099
Dirofilaria immitis
nDi.2.2.2.g11099
N
0.677
LOAG_18151
Loa loa
LOAG_18151
N
0.677
EEL_0000223401
Elaeophora elaphi
EEL_0000223401
N
0.677
ENSCSAVG00000009270
Ciona savignyi
ENSCSAVG00000009270
N
0.677
WUBG_03914
Wuchereria bancrofti
WUBG_03914
N
0.677
Bm4188
Brugia malayi
Bm4188
N
0.677
Ocbimv22012197m.g
Octopus bimaculoides
Ocbimv22012197m.g
I
0.674
fgenesh2_pg.scaffold_19000069
Branchiostoma floridae
fgenesh2_pg.scaffold_19000069
N
0.673
ENSONIG00000016627
Oreochromis niloticus
ENSONIG00000016627
N
0.673
fgenesh2_pg.scaffold_177000008
Branchiostoma floridae
fgenesh2_pg.scaffold_177000008
N
0.673
XP_002936155
Xenopus tropicalis
XP_002936155
N
0.673
ENSCING00000009516
Ciona intestinalis
ENSCING00000009516
N
0.671
GPUH_0000021901
Gongylonema pulchrum
GPUH_0000021901
N
0.671
ENSXMAG00000000362
Xiphophorus maculatus
ENSXMAG00000000362
I
0.666
tox2
Tetraodon nigroviridis
ENSTNIG00000005683
N
0.665
tox2
Takifugu rubripes
ENSTRUG00000013848
N
0.665
ENSPFOG00000008402
Poecilia formosa
ENSPFOG00000008402
N
0.665
ENSSSCG00000023554
Sus scrofa
ENSSSCG00000023554
N
0.665
ENSXMAG00000016763
Xiphophorus maculatus
ENSXMAG00000016763
N
0.665
tox2
Gasterosteus aculeatus
ENSGACG00000006914
N
0.665
ENSGMOG00000008081
Gadus morhua
ENSGMOG00000008081
N
0.665
tox2
Oryzias latipes
ENSORLG00000004818
N
0.665
ENSTGUG00000003811
Taeniopygia guttata
ENSTGUG00000003811
N
0.665
Cflo_00230--XP_624018.2_APIME
Camponotus floridanus
Cflo_00230--XP_624018.2_APIME
N
0.662
nOo.2.0.1.g12207
Onchocerca ochengi
nOo.2.0.1.g12207
N
0.658
WBGene00236865
Onchocerca volvulus
WBGene00236865
N
0.658
OFLC_0001222801
Onchocerca flexuosa
OFLC_0001222801
N
0.658
ENSGMOG00000013406
Gadus morhua
ENSGMOG00000013406
N
0.654
nLs.2.1.2.g04689
Litomosoides sigmodontis
nLs.2.1.2.g04689
N
0.648
ENSPFOG00000002336
Poecilia formosa
ENSPFOG00000002336
N
0.643
tox4.S
Xenopus laevis
XB-GENE-993810
I
0.637
tox4b
Danio rerio
ENSDARG00000100163
I
0.637
ENSGGOG00000025016
Gorilla gorilla
ENSGGOG00000025016
I
0.631
SMU15029818
Schmidtea mediterranea
SMU15029818
I
0.629
HelroG145107
Helobdella robusta
HelroG145107
N
0.626
BTMF_0001006201
Brugia timori
BTMF_0001006201
I
0.614
ENSMMUG00000014077
Macaca mulatta
ENSMMUG00000014077
N
0.610
LCUP006200
Lucilia cuprina
LCUP006200
N
0.602
ACEP19638
Atta cephalotes
ACEP19638
I
0.600
MDOA008605
Musca domestica
MDOA008605
N
0.593
ASIM_0001958001
Anisakis simplex
ASIM_0001958001
N
0.565
TCLT_0000844001
Thelazia callipaeda
TCLT_0000844001
N
0.561
EFV52201
Trichinella spiralis
EFV52201
N
0.539
D918_03887
Trichuris suis
D918_03887
N
0.539
L798_00437
Zootermopsis nevadensis
L798_00437
N
0.538
AMIN005634
Anopheles minimus
AMIN005634
N
0.538
Eucgr.I01920
Eucalyptus grandis
Eucgr.I01920
N
0.537
CPIJ003178
Culex quinquefasciatus
CPIJ003178
N
0.532
AEPI010254
Anopheles epiroticus
AEPI010254
N
0.532
CpipJ_CPIJ003178
Culex pipiens
CpipJ_CPIJ003178
N
0.532
AMAM014030
Anopheles maculatus
AMAM014030
N
0.532
AFUN005717
Anopheles funestus
AFUN005717
N
0.530
TTHERM_00216040
Tetrahymena thermophila
TTHERM_00216040
N
0.520
DME_0000632401
Dracunculus medinensis
DME_0000632401
N
0.514
tetur31g01070
Tetranychus urticae
tetur31g01070
N
0.511
ENSMMUP00000034886
Macaca fascicularis
ENSMMUP00000034886
N
0.505
ENSTGUG00000014902
Taeniopygia guttata
ENSTGUG00000014902
N
0.504
RO3G_07013
Rhizopus oryzae
RO3G_07013
I
0.502
TOX2
Sorex araneus
ENSSARG00000001080
N
0.498
Hsal_06265--XP_624018.2_APIME
Harpegnathos saltator
Hsal_06265--XP_624018.2_APIME
N
0.498
tetur31g00660
Tetranychus urticae
tetur31g00660
N
0.497
tetur31g00840
Tetranychus urticae
tetur31g00840
N
0.497
estExt_fgeneshMC_pg.C_20910
Mucor circinelloides
estExt_fgeneshMC_pg.C_20910
I
0.490
fgeneshMC_pg.3_#_1190
Mucor circinelloides
fgeneshMC_pg.3_#_1190
I
0.482
MESCA003479
Megaselia scalaris
MESCA003479
N
0.480
PHUM393920
Pediculus humanus
PHUM393920
N
0.476
RO3G_05222
Rhizopus oryzae
RO3G_05222
N
0.469
RO3G_16060
Rhizopus oryzae
RO3G_16060
I
0.468
TCNE_0000652201
Toxocara canis
TCNE_0000652201
N
0.467
ASU_00726
Ascaris suum
ASU_00726
N
0.461
ALUE_0000699101
Ascaris lumbricoides
ALUE_0000699101
N
0.461
RSKR_0000620800
Rhabditophanes kr3021
RSKR_0000620800
N
0.460
ANCCEY_15918
Ancylostoma ceylanicum
ANCCEY_15918
N
0.456
ANCCEY_15064
Ancylostoma ceylanicum
ANCCEY_15064
N
0.456
ANCCAN_09463
Ancylostoma caninum
ANCCAN_09463
N
0.456
ACAC_0000973801
Angiostrongylus cantonensis
ACAC_0000973801
N
0.456
DICVIV_00270
Dictyocaulus viviparus
DICVIV_00270
N
0.456
HCOI00076900
Haemonchus contortus
HCOI00076900
N
0.456
HCOI01215700
Haemonchus contortus
HCOI01215700
N
0.456
ANCDUO_06783
Ancylostoma duodenale
ANCDUO_06783
N
0.456
NECAME_01599
Necator americanus
NECAME_01599
N
0.456
SVUK_0000363901
Strongylus vulgaris
SVUK_0000363901
N
0.456
TELCIR_16246
Teladorsagia circumcincta
TELCIR_16246
N
0.456
scaffold517-EXSNAP2012.7
Pristionchus exspectatus
scaffold517-EXSNAP2012.7
N
0.456
OESDEN_01314
Oesophagostomum dentatum
OESDEN_01314
N
0.456
RO3G_15755
Rhizopus oryzae
RO3G_15755
I
0.455
CJA03316
Caenorhabditis japonica
CJA03316
N
0.454
CJA30740
Caenorhabditis japonica
CJA30740
N
0.454
pbrm-1
Caenorhabditis elegans
WBGene00007042
N
0.454
CBN31697
Caenorhabditis brenneri
CBN31697
N
0.454
L889_g13125
Steinernema feltiae
L889_g13125
N
0.454
CBN07735
Caenorhabditis brenneri
CBN07735
N
0.454
CRE14258
Caenorhabditis remanei
CRE14258
N
0.454
CBG11867
Caenorhabditis briggsae
CBG11867
N
0.454
ENSAPLG00000003986
Anas platyrhynchos
ENSAPLG00000003986
N
0.453
GA11397
Drosophila pseudoobscura
FBgn0071451
N
0.451
GL20738
Drosophila persimilis
FBgn0158333
N
0.451
fgeneshMC_pg.1_#_1771
Mucor circinelloides
fgeneshMC_pg.1_#_1771
I
0.451
SAPIO_CDS3355
Scedosporium apiospermum
SAPIO_CDS3355
I
0.449
AOL_s00076g81
Arthrobotrys oligospora
AOL_s00076g81
I
0.449
Myotis_brandtii_DAP3_10031965
Myotis brandtii
Myotis_brandtii_DAP3_10031965
N
0.449
L596_g21045
Steinernema carpocapsae
L596_g21045
I
0.449
L892_g13433
Steinernema scapterisci
L892_g13433
I
0.447
Hmgb1
Rattus norvegicus
ENSRNOG00000029813
N
0.445
O9G_002262
Rozella allomycis
O9G_002262
I
0.444
BGLB013626
Biomphalaria glabrata
BGLB013626
N
0.439
EDI_340970
Entamoeba dispar
EDI_340970
N
0.438
nRc.2.0.1.g36724
Romanomermis culicivorax
nRc.2.0.1.g36724
N
0.438
BGLB013489
Biomphalaria glabrata
BGLB013489
N
0.434
CPUR_04901
Claviceps purpurea
CPUR_04901
I
0.425
estExt_fgenesh3_kg.C_40082
Neurospora discreta
estExt_fgenesh3_kg.C_40082
I
0.425
NCU02819
Neurospora crassa
NCU02819
D
0.425
SMAC_00615
Sordaria macrospora
SMAC_00615
I
0.425
NEUTE1DRAFT_106544
Neurospora tetrasperma
NEUTE1DRAFT_106544
I
0.425
ACYPI001480
Acyrthosiphon pisum
ACYPI001480
N
0.422
GSTUM_00011974001
Tuber melanosporum
GSTUM_00011974001
I
0.422
PODANS_1_7390
Podospora anserina
PODANS_1_7390
I
0.419
NEMVEDRAFT_v1g59568
Nematostella vectensis
NEMVEDRAFT_v1g59568
N
0.418
BN7_5566
Wickerhamomyces ciferrii
BN7_5566
I
0.418
DRE_06603
Drechslerella stenobrocha
DRE_06603
I
0.417
TPHA_0A03740
Tetrapisispora phaffii
TPHA_0A03740
I
0.415