pbrm-1 (Caenorhabditis elegans)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 WBGene00007042 T333276_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
C26C6.1a Sox 1449 1517
C26C6.1b.1 Sox 79 148
C26C6.1b.2 Sox 79 148

Links

Other Sox family TFs
Other Caenorhabditis elegans TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE14258 Caenorhabditis remanei CRE14258 N 0.731
CBN31697 Caenorhabditis brenneri CBN31697 N 0.731
CBN07735 Caenorhabditis brenneri CBN07735 N 0.731
CBG11867 Caenorhabditis briggsae CBG11867 N 0.704
CJA30740 Caenorhabditis japonica CJA30740 N 0.691
CJA03316 Caenorhabditis japonica CJA03316 N 0.691
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N 0.663
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N 0.656
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N 0.656
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N 0.656
L889_g13125 Steinernema feltiae L889_g13125 N 0.617
L898_g14011 Steinernema monticolum L898_g14011 N 0.615
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N 0.615
Minc06622 Meloidogyne incognita Minc06622 N 0.615
SSTP_0001127200 Strongyloides stercoralis SSTP_0001127200 N 0.612
SMUV_0000135001 Syphacia muris SMUV_0000135001 N 0.598
scaffold517-EXSNAP2012.7 Pristionchus exspectatus scaffold517-EXSNAP2012.7 N 0.593
ASU_00939 Ascaris suum ASU_00939 N 0.591
nLs.2.1.2.g08566 Litomosoides sigmodontis nLs.2.1.2.g08566 N 0.587
nOo.2.0.1.g07918 Onchocerca ochengi nOo.2.0.1.g07918 N 0.587
nDi.2.2.2.g10298 Dirofilaria immitis nDi.2.2.2.g10298 N 0.587
WBGene00238178 Onchocerca volvulus WBGene00238178 N 0.587
nDi.2.2.2.g06671 Dirofilaria immitis nDi.2.2.2.g06671 N 0.587
WUBG_00348 Wuchereria bancrofti WUBG_00348 N 0.587
Bm2393 Brugia malayi Bm2393 N 0.587
TCLT_0000189901 Thelazia callipaeda TCLT_0000189901 N 0.583
DICVIV_00270 Dictyocaulus viviparus DICVIV_00270 N 0.566
ANCCEY_15064 Ancylostoma ceylanicum ANCCEY_15064 N 0.566
ANCCAN_09463 Ancylostoma caninum ANCCAN_09463 N 0.566
NECAME_01599 Necator americanus NECAME_01599 N 0.566
ANCDUO_06783 Ancylostoma duodenale ANCDUO_06783 N 0.566
SVUK_0000363901 Strongylus vulgaris SVUK_0000363901 N 0.566
HCOI00076900 Haemonchus contortus HCOI00076900 N 0.566
ANCCEY_15918 Ancylostoma ceylanicum ANCCEY_15918 N 0.566
OESDEN_01314 Oesophagostomum dentatum OESDEN_01314 N 0.566
TELCIR_16246 Teladorsagia circumcincta TELCIR_16246 N 0.566
ACAC_0000973801 Angiostrongylus cantonensis ACAC_0000973801 N 0.566
HCOI01215700 Haemonchus contortus HCOI01215700 N 0.566
ASIM_0001613301 Anisakis simplex ASIM_0001613301 N 0.560
L596_g8243 Steinernema carpocapsae L596_g8243 N 0.551
L893_g19156 Steinernema glaseri L893_g19156 N 0.551
L892_g19322 Steinernema scapterisci L892_g19322 N 0.551
GPUH_0001659301 Gongylonema pulchrum GPUH_0001659301 N 0.550
LOAG_15875 Loa loa LOAG_15875 N 0.550
TMUE_s0089001400 Trichuris muris TMUE_s0089001400 N 0.524
tetur31g01070 Tetranychus urticae tetur31g01070 N 0.522
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N 0.520
RSKR_0000607700 Rhabditophanes kr3021 RSKR_0000607700 N 0.517
CpipJ_CPIJ003178 Culex pipiens CpipJ_CPIJ003178 N 0.513
L798_00437 Zootermopsis nevadensis L798_00437 N 0.513
Hsal_06265--XP_624018.2_APIME Harpegnathos saltator Hsal_06265--XP_624018.2_APIME N 0.513
AMIN005634 Anopheles minimus AMIN005634 N 0.513
TOX2 Sorex araneus ENSSARG00000001080 N 0.513
AMAM014030 Anopheles maculatus AMAM014030 N 0.513
ENSTGUG00000014902 Taeniopygia guttata ENSTGUG00000014902 N 0.513
D918_03887 Trichuris suis D918_03887 N 0.513
EFV52201 Trichinella spiralis EFV52201 N 0.513
CPIJ003178 Culex quinquefasciatus CPIJ003178 N 0.513
AEPI010254 Anopheles epiroticus AEPI010254 N 0.513
AFUN005717 Anopheles funestus AFUN005717 N 0.506
tox2 Takifugu rubripes ENSTRUG00000013848 N 0.503
D918_05288 Trichuris suis D918_05288 N 0.497
tetur31g00840 Tetranychus urticae tetur31g00840 N 0.495
tetur31g00660 Tetranychus urticae tetur31g00660 N 0.495
BTMF_0001478401 Brugia timori BTMF_0001478401 N 0.494
PEQ_0000212901 Parascaris equorum PEQ_0000212901 N 0.484
TCNE_0000652201 Toxocara canis TCNE_0000652201 N 0.480
ALUE_0000699101 Ascaris lumbricoides ALUE_0000699101 N 0.480
ASU_00726 Ascaris suum ASU_00726 N 0.480
BGLB013626 Biomphalaria glabrata BGLB013626 N 0.476
CBN15844 Caenorhabditis brenneri CBN15844 N 0.473
EFV56095 Trichinella spiralis EFV56095 N 0.470
EFV56090 Trichinella spiralis EFV56090 N 0.470
D917_05046 Trichinella nativa D917_05046 N 0.470
D917_05048 Trichinella nativa D917_05048 N 0.470
snap_masked-nMf.1.1.scaf06721-processed-gene-0.5 Meloidogyne floridensis snap_masked-nMf.1.1.scaf06721-processed-gene-0.5 N 0.470
D918_06015 Trichuris suis D918_06015 N 0.470
TC000618 Tribolium castaneum TC000618 N 0.468
ACYPI004978 Acyrthosiphon pisum ACYPI004978 N 0.467
D918_09264 Trichuris suis D918_09264 N 0.466
TTRE_0000108401 Trichuris trichiura TTRE_0000108401 N 0.466
TMUE_s0009009400 Trichuris muris TMUE_s0009009400 N 0.466
augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1 N 0.464
TMUE_s0227000300 Trichuris muris TMUE_s0227000300 N 0.463
nLs.2.1.2.g04689 Litomosoides sigmodontis nLs.2.1.2.g04689 N 0.463
Cflo_01038--XP_625055.2_APIME Camponotus floridanus Cflo_01038--XP_625055.2_APIME N 0.460
GB42921 Apis mellifera GB42921 N 0.460
Hsal_02676--XP_625055.2_APIME Harpegnathos saltator Hsal_02676--XP_625055.2_APIME N 0.460
ACEP25803 Atta cephalotes ACEP25803 N 0.460
SINV16486 Solenopsis invicta SINV16486 N 0.460
CLEC001918 Cimex lectularius CLEC001918 I 0.456
AALB006415 Anopheles albimanus AALB006415 I 0.456
AARA010616 Anopheles arabiensis AARA010616 I 0.456
HHAL000823-PA Halyomorpha halys HHAL000823-PA I 0.456
AEPI009418 Anopheles epiroticus AEPI009418 N 0.456
ACUA004409 Anopheles culicifacies ACUA004409 I 0.456
AFAF011136 Anopheles farauti AFAF011136 I 0.456
ACUA025632 Anopheles culicifacies ACUA025632 N 0.456
AATE016215 Anopheles atroparvus AATE016215 I 0.456
ADAC003252 Anopheles darlingi ADAC003252 I 0.456
AMEC012857 Anopheles melas AMEC012857 I 0.456
ADAC005840 Anopheles darlingi ADAC005840 N 0.456
ISCW018867 Ixodes scapularis ISCW018867 I 0.456
tox4b Takifugu rubripes ENSTRUG00000002594 N 0.456
tox4b Tetraodon nigroviridis ENSTNIG00000003691 N 0.456
ENSONIG00000000284 Oreochromis niloticus ENSONIG00000000284 N 0.456
tox4b Oryzias latipes ENSORLG00000008779 N 0.456
ASTEI10740 Anopheles stephensi ASTEI10740 N 0.456
AGAP000281 Anopheles gambiae AGAP000281 I 0.456
ASTEI07799 Anopheles stephensi ASTEI07799 I 0.456
RPRC000650 Rhodnius prolixus RPRC000650 I 0.456
AMEM006878 Anopheles merus AMEM006878 I 0.456
AMIN002364 Anopheles minimus AMIN002364 N 0.456
ACYPI005775 Acyrthosiphon pisum ACYPI005775 I 0.456
ASIS016667 Anopheles sinensis ASIS016667 I 0.456
DME_0000632401 Dracunculus medinensis DME_0000632401 N 0.455
EFV61455 Trichinella spiralis EFV61455 N 0.454
TMUE_s0011001600 Trichuris muris TMUE_s0011001600 I 0.454
TTRE_0000401801 Trichuris trichiura TTRE_0000401801 I 0.454
D917_02150 Trichinella nativa D917_02150 N 0.454
ISCW005293 Ixodes scapularis ISCW005293 N 0.452
PHUM393920 Pediculus humanus PHUM393920 N 0.451
HPLM_0002008001 Haemonchus placei HPLM_0002008001 N 0.450
CPIJ007271 Culex quinquefasciatus CPIJ007271 N 0.449
CpipJ_CPIJ007271 Culex pipiens CpipJ_CPIJ007271 N 0.449
GI24041 Drosophila mojavensis FBgn0146764 N 0.448
LDEC007066 Leptinotarsa decemlineata LDEC007066 N 0.448
ENSCSAVG00000009270 Ciona savignyi ENSCSAVG00000009270 N 0.447
RSKR_0000620800 Rhabditophanes kr3021 RSKR_0000620800 N 0.446
Bm9369 Brugia malayi Bm9369 N 0.443
WBGene00239172 Onchocerca volvulus WBGene00239172 N 0.443
nDi.2.2.2.g01867 Dirofilaria immitis nDi.2.2.2.g01867 N 0.443
nLs.2.1.2.g07200 Litomosoides sigmodontis nLs.2.1.2.g07200 N 0.443
LOAG_11340 Loa loa LOAG_11340 N 0.443
WUBG_03167 Wuchereria bancrofti WUBG_03167 N 0.443
nAv.1.0.1.g05839 Acanthocheilonema viteae nAv.1.0.1.g05839 N 0.443
OFLC_0000194401 Onchocerca flexuosa OFLC_0000194401 N 0.443
nOo.2.0.1.g03638 Onchocerca ochengi nOo.2.0.1.g03638 N 0.443
BTMF_0001523401 Brugia timori BTMF_0001523401 N 0.443
EEL_0000724001 Elaeophora elaphi EEL_0000724001 N 0.443
Bm7765 Brugia malayi Bm7765 N 0.443
ENSCING00000009516 Ciona intestinalis ENSCING00000009516 N 0.442
pbrm1l Takifugu rubripes ENSTRUG00000005335 N 0.441
pbrm1l Tetraodon nigroviridis ENSTNIG00000014731 N 0.441
pbrm1l Danio rerio ENSDARG00000077038 N 0.441
MESCA007902 Megaselia scalaris MESCA007902 N 0.441
MDOA008474 Musca domestica MDOA008474 N 0.440
LCUP007789 Lucilia cuprina LCUP007789 N 0.440
ISCW015985 Ixodes scapularis ISCW015985 N 0.439
SPU_002060 Strongylocentrotus purpuratus SPU_002060 N 0.439
ENSGMOG00000013406 Gadus morhua ENSGMOG00000013406 N 0.439
HMEL006186 Heliconius melpomene HMEL006186 N 0.438
GK13168 Drosophila willistoni FBgn0215177 N 0.434
LOAG_18151 Loa loa LOAG_18151 N 0.434
EEL_0000223401 Elaeophora elaphi EEL_0000223401 N 0.434
nDi.2.2.2.g11099 Dirofilaria immitis nDi.2.2.2.g11099 N 0.434
WUBG_03914 Wuchereria bancrofti WUBG_03914 N 0.434
GPUH_0000021901 Gongylonema pulchrum GPUH_0000021901 N 0.434
nAv.1.0.1.g02116 Acanthocheilonema viteae nAv.1.0.1.g02116 N 0.434
Bm4188 Brugia malayi Bm4188 N 0.434
CJA17191 Caenorhabditis japonica CJA17191 N 0.431
ENSGMOG00000008081 Gadus morhua ENSGMOG00000008081 N 0.429
ENSMMUG00000014077 Macaca mulatta ENSMMUG00000014077 N 0.429
tox4a Gasterosteus aculeatus ENSGACG00000014107 I 0.429
BGIBMGA006848 Bombyx mori BGIBMGA006848 I 0.429
tox4b Danio rerio ENSDARG00000100163 I 0.429
tox2 Gasterosteus aculeatus ENSGACG00000006914 N 0.429
DAPPUDRAFT_19853 Daphnia pulex DAPPUDRAFT_19853 I 0.429
HMEL005034 Heliconius melpomene HMEL005034 I 0.429
M408DRAFT_328926 Serendipita vermifera M408DRAFT_328926 I 0.429
KGM_14572 Danaus plexippus KGM_14572 I 0.429
MCINX005468 Melitaea cinxia MCINX005468 I 0.429
NV10488 Nasonia vitripennis NV10488 I 0.429
tox4.S Xenopus laevis XB-GENE-993810 I 0.429
TC012723 Tribolium castaneum TC012723 I 0.429
tox2 Oryzias latipes ENSORLG00000004818 N 0.429
ENSXMAG00000016763 Xiphophorus maculatus ENSXMAG00000016763 N 0.429
ENSPFOG00000008402 Poecilia formosa ENSPFOG00000008402 N 0.429
ENSPFOG00000002336 Poecilia formosa ENSPFOG00000002336 N 0.429
ENSSSCG00000023554 Sus scrofa ENSSSCG00000023554 N 0.429
ENSTGUG00000003811 Taeniopygia guttata ENSTGUG00000003811 N 0.429
ENSXMAG00000000362 Xiphophorus maculatus ENSXMAG00000000362 I 0.429
tox2 Tetraodon nigroviridis ENSTNIG00000005683 N 0.429
BGLB013489 Biomphalaria glabrata BGLB013489 N 0.428
SNAPOd2T00002710001 Oikopleura dioica SNAPOd2T00002710001 I 0.428
Sakowv30024549m.g Saccoglossus kowalevskii Sakowv30024549m.g N 0.427
ENSGGOG00000025016 Gorilla gorilla ENSGGOG00000025016 I 0.427
fgenesh2_pg.scaffold_19000069 Branchiostoma floridae fgenesh2_pg.scaffold_19000069 N 0.427
Ocbimv22012197m.g Octopus bimaculoides Ocbimv22012197m.g I 0.427
fgenesh2_pg.scaffold_177000008 Branchiostoma floridae fgenesh2_pg.scaffold_177000008 N 0.427
ENSONIG00000016627 Oreochromis niloticus ENSONIG00000016627 N 0.427
HelroG145107 Helobdella robusta HelroG145107 N 0.427
LotgiG109021 Lottia gigantea LotgiG109021 I 0.427
XP_002936155 Xenopus tropicalis XP_002936155 N 0.427
CGI_10017717 Crassostrea gigas CGI_10017717 I 0.427
ACHR006211 Anopheles christyi ACHR006211 N 0.425
AMEC012325 Anopheles melas AMEC012325 N 0.425
AQUA001810 Anopheles quadriannulatus AQUA001810 N 0.425
AGAP001099 Anopheles gambiae AGAP001099 N 0.425
AFUN001272 Anopheles funestus AFUN001272 N 0.425
AMAM022417 Anopheles maculatus AMAM022417 N 0.425
ACOM033657 Anopheles coluzzii ACOM033657 N 0.425
AALB009551 Anopheles albimanus AALB009551 N 0.425
AARA006496 Anopheles arabiensis AARA006496 N 0.425
AFAF001135 Anopheles farauti AFAF001135 N 0.424
YQE_05481 Dendroctonus ponderosae YQE_05481 N 0.423
nRc.2.0.1.g42996 Romanomermis culicivorax nRc.2.0.1.g42996 N 0.422
RPRC014309 Rhodnius prolixus RPRC014309 N 0.421
GB43084 Apis mellifera GB43084 I 0.421
ENSGMOG00000015161 Gadus morhua ENSGMOG00000015161 I 0.421
BXY_0575000 Bursaphelenchus xylophilus BXY_0575000 N 0.421
BGIBMGA010711 Bombyx mori BGIBMGA010711 N 0.420
PIIN_05794 Piriformospora indica PIIN_05794 I 0.420
GJ23670 Drosophila virilis FBgn0210767 N 0.418
AMTR_s00023p00232620 Amborella trichopoda AMTR_s00023p00232620 N 0.418
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.418
Sakowv30031460m.g Saccoglossus kowalevskii Sakowv30031460m.g N 0.418
LLOJ004028 Lutzomyia longipalpis LLOJ004028 N 0.418
PPAI002532 Phlebotomus papatasi PPAI002532 N 0.418
ENSXMAG00000016160 Xiphophorus maculatus ENSXMAG00000016160 N 0.417
ENSAMXG00000016832 Astyanax mexicanus ENSAMXG00000016832 N 0.417
fgenesh2_pg.scaffold_1690000001 Branchiostoma floridae fgenesh2_pg.scaffold_1690000001 N 0.417
ENSPFOG00000017300 Poecilia formosa ENSPFOG00000017300 N 0.417
CRE28315 Caenorhabditis remanei CRE28315 N 0.416
WBGene00236865 Onchocerca volvulus WBGene00236865 N 0.415
nOo.2.0.1.g12207 Onchocerca ochengi nOo.2.0.1.g12207 N 0.415
OFLC_0001222801 Onchocerca flexuosa OFLC_0001222801 N 0.415