pbrm1l (Danio rerio)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSDARG00000077038 T327865_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable chromatin binding activity. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of RSC-type complex. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000111664 Sox 1348 1404
ENSDARP00000114800 Sox 1345 1410
ENSDARP00000117183 Sox 1345 1410

Links

Other Sox family TFs
Other Danio rerio TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000016832 Astyanax mexicanus ENSAMXG00000016832 N 0.708
ENSPFOG00000017300 Poecilia formosa ENSPFOG00000017300 N 0.706
ENSXMAG00000016160 Xiphophorus maculatus ENSXMAG00000016160 N 0.706
pbrm1l Tetraodon nigroviridis ENSTNIG00000014731 N 0.673
pbrm1l Takifugu rubripes ENSTRUG00000005335 N 0.673
ENSONIG00000004158 Oreochromis niloticus ENSONIG00000004158 N 0.644
ENSORLG00000018988 Oryzias latipes ENSORLG00000018988 N 0.582
ENSORLG00000001101 Oryzias latipes ENSORLG00000001101 N 0.570
ENSORLG00000019807 Oryzias latipes ENSORLG00000019807 N 0.570
D918_03887 Trichuris suis D918_03887 N 0.541
SNAPOd2T00002710001 Oikopleura dioica SNAPOd2T00002710001 I 0.535
CpipJ_CPIJ003178 Culex pipiens CpipJ_CPIJ003178 N 0.535
PHUM393920 Pediculus humanus PHUM393920 N 0.535
AEPI010254 Anopheles epiroticus AEPI010254 N 0.535
L798_00437 Zootermopsis nevadensis L798_00437 N 0.535
CPIJ003178 Culex quinquefasciatus CPIJ003178 N 0.535
AMIN005634 Anopheles minimus AMIN005634 N 0.535
AMAM014030 Anopheles maculatus AMAM014030 N 0.535
Hba_16915 Heterorhabditis bacteriophora Hba_16915 I 0.528
Hsal_06265--XP_624018.2_APIME Harpegnathos saltator Hsal_06265--XP_624018.2_APIME N 0.507
Sakowv30031460m.g Saccoglossus kowalevskii Sakowv30031460m.g N 0.506
SBAD_0000070901 Soboliphyme baturini SBAD_0000070901 I 0.505
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.505
ALUE_0000699101 Ascaris lumbricoides ALUE_0000699101 N 0.505
ASU_00726 Ascaris suum ASU_00726 N 0.505
TCNE_0000652201 Toxocara canis TCNE_0000652201 N 0.505
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N 0.500
ENSTGUG00000014902 Taeniopygia guttata ENSTGUG00000014902 N 0.500
TOX2 Sorex araneus ENSSARG00000001080 N 0.500
HPLM_0002008001 Haemonchus placei HPLM_0002008001 N 0.495
TELCIR_25179 Teladorsagia circumcincta TELCIR_25179 N 0.495
TELCIR_19210 Teladorsagia circumcincta TELCIR_19210 N 0.495
ISCW005293 Ixodes scapularis ISCW005293 N 0.486
ENSORLG00000018700 Oryzias latipes ENSORLG00000018700 N 0.472
tetur31g01070 Tetranychus urticae tetur31g01070 N 0.465
tetur31g00660 Tetranychus urticae tetur31g00660 N 0.465
tetur31g00840 Tetranychus urticae tetur31g00840 N 0.465
EFV52201 Trichinella spiralis EFV52201 N 0.459
ASIM_0000224701 Anisakis simplex ASIM_0000224701 N 0.456
ASIM_0001613301 Anisakis simplex ASIM_0001613301 N 0.454
CRE28315 Caenorhabditis remanei CRE28315 N 0.453
Sjc_0086690 Schistosoma japonicum Sjc_0086690 N 0.452
NBR_0000051501 Nippostrongylus brasiliensis NBR_0000051501 N 0.451
HPBE_0002300401 Heligmosomoides bakeri HPBE_0002300401 N 0.451
AFUN005717 Anopheles funestus AFUN005717 N 0.450
BGLB013489 Biomphalaria glabrata BGLB013489 N 0.450
DICVIV_02621 Dictyocaulus viviparus DICVIV_02621 N 0.449
HMGB1 Ornithorhynchus anatinus ENSOANG00000011494 N 0.444
LOAG_15875 Loa loa LOAG_15875 N 0.444
GPUH_0001659301 Gongylonema pulchrum GPUH_0001659301 N 0.444
MhA1_Contig1224.frz3.gene1 Meloidogyne hapla MhA1_Contig1224.frz3.gene1 N 0.443
CJA17191 Caenorhabditis japonica CJA17191 N 0.443
BGLB013626 Biomphalaria glabrata BGLB013626 N 0.441
pbrm-1 Caenorhabditis elegans WBGene00007042 N 0.441
RSKR_0000607700 Rhabditophanes kr3021 RSKR_0000607700 N 0.438
fgenesh2_pg.scaffold_1690000001 Branchiostoma floridae fgenesh2_pg.scaffold_1690000001 N 0.438
TMUE_s0227000300 Trichuris muris TMUE_s0227000300 N 0.437
D918_06015 Trichuris suis D918_06015 N 0.437
TMUE_s0089001400 Trichuris muris TMUE_s0089001400 N 0.437
SMAR009325 Strigamia maritima SMAR009325 N 0.436
NV16860 Nasonia vitripennis NV16860 N 0.436
PEQ_0000212901 Parascaris equorum PEQ_0000212901 N 0.435
CBN15844 Caenorhabditis brenneri CBN15844 N 0.434
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N 0.433
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N 0.433
66829 Aureococcus anophagefferens 66829 N 0.433
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N 0.433
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N 0.433
67048 Aureococcus anophagefferens 67048 N 0.433
CBN07735 Caenorhabditis brenneri CBN07735 N 0.432
CBN31697 Caenorhabditis brenneri CBN31697 N 0.432
CRE14258 Caenorhabditis remanei CRE14258 N 0.432
SVUK_0000686401 Strongylus vulgaris SVUK_0000686401 N 0.427
SPU_000793 Strongylocentrotus purpuratus SPU_000793 N 0.427
TRE_0000389001 Trichobilharzia regenti TRE_0000389001 N 0.426
mgf006762m Mimulus guttatus mgf006762m N 0.424
Sakowv30021656m.g Saccoglossus kowalevskii Sakowv30021656m.g N 0.423
EVEC_0001116801 Enterobius vermicularis EVEC_0001116801 N 0.423
NECAME_06830 Necator americanus NECAME_06830 N 0.423
SMRZ_0001007401 Schistosoma margrebowiei SMRZ_0001007401 N 0.420
SROB_0001114901 Schistosoma rodhaini SROB_0001114901 N 0.420
PNEG_03347 Pneumocystis murina PNEG_03347 I 0.420
ASU_00939 Ascaris suum ASU_00939 N 0.419
SMUV_0000135001 Syphacia muris SMUV_0000135001 N 0.419
CBG11867 Caenorhabditis briggsae CBG11867 N 0.417
ENSOGAG00000011763 Otolemur garnettii ENSOGAG00000011763 N 0.417
L889_g13125 Steinernema feltiae L889_g13125 N 0.417
L898_g14011 Steinernema monticolum L898_g14011 N 0.417
tox2 Takifugu rubripes ENSTRUG00000013848 N 0.416