pbrm1l (Takifugu rubripes)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSTRUG00000005335 T329299_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000012797 Sox 1364 1432
ENSTRUP00000012798 Sox 1364 1420
ENSTRUP00000012799 Sox 257 312

Links

Other Sox family TFs
Other Takifugu rubripes TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
pbrm1l Tetraodon nigroviridis ENSTNIG00000014731 N 0.741
ENSORLG00000018988 Oryzias latipes ENSORLG00000018988 N 0.741
ENSONIG00000004158 Oreochromis niloticus ENSONIG00000004158 N 0.679
pbrm1l Danio rerio ENSDARG00000077038 N 0.673
ENSPFOG00000017300 Poecilia formosa ENSPFOG00000017300 N 0.613
ENSXMAG00000016160 Xiphophorus maculatus ENSXMAG00000016160 N 0.613
ENSORLG00000001101 Oryzias latipes ENSORLG00000001101 N 0.595
ENSORLG00000019807 Oryzias latipes ENSORLG00000019807 N 0.595
ENSAMXG00000016832 Astyanax mexicanus ENSAMXG00000016832 N 0.588
D918_03887 Trichuris suis D918_03887 N 0.547
L798_00437 Zootermopsis nevadensis L798_00437 N 0.541
CpipJ_CPIJ003178 Culex pipiens CpipJ_CPIJ003178 N 0.541
PHUM393920 Pediculus humanus PHUM393920 N 0.541
CPIJ003178 Culex quinquefasciatus CPIJ003178 N 0.541
AEPI010254 Anopheles epiroticus AEPI010254 N 0.541
AMAM014030 Anopheles maculatus AMAM014030 N 0.541
AMIN005634 Anopheles minimus AMIN005634 N 0.541
ENSORLG00000018700 Oryzias latipes ENSORLG00000018700 N 0.540
Hba_16915 Heterorhabditis bacteriophora Hba_16915 I 0.533
SNAPOd2T00002710001 Oikopleura dioica SNAPOd2T00002710001 I 0.529
Hsal_06265--XP_624018.2_APIME Harpegnathos saltator Hsal_06265--XP_624018.2_APIME N 0.513
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.511
TCNE_0000652201 Toxocara canis TCNE_0000652201 N 0.511
ALUE_0000699101 Ascaris lumbricoides ALUE_0000699101 N 0.511
SBAD_0000070901 Soboliphyme baturini SBAD_0000070901 I 0.511
ASU_00726 Ascaris suum ASU_00726 N 0.511
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N 0.506
ENSTGUG00000014902 Taeniopygia guttata ENSTGUG00000014902 N 0.506
TOX2 Sorex araneus ENSSARG00000001080 N 0.506
TELCIR_19210 Teladorsagia circumcincta TELCIR_19210 N 0.501
TELCIR_25179 Teladorsagia circumcincta TELCIR_25179 N 0.501
HPLM_0002008001 Haemonchus placei HPLM_0002008001 N 0.495
ISCW005293 Ixodes scapularis ISCW005293 N 0.486
Sakowv30031460m.g Saccoglossus kowalevskii Sakowv30031460m.g N 0.481
EFV52201 Trichinella spiralis EFV52201 N 0.465
BGLB013489 Biomphalaria glabrata BGLB013489 N 0.456
AFUN005717 Anopheles funestus AFUN005717 N 0.456
NBR_0000051501 Nippostrongylus brasiliensis NBR_0000051501 N 0.451
HPBE_0002300401 Heligmosomoides bakeri HPBE_0002300401 N 0.451
Sjc_0086690 Schistosoma japonicum Sjc_0086690 N 0.446
L898_g14011 Steinernema monticolum L898_g14011 N 0.444
HMGB1 Ornithorhynchus anatinus ENSOANG00000011494 N 0.444
L889_g13125 Steinernema feltiae L889_g13125 N 0.444
L596_g8243 Steinernema carpocapsae L596_g8243 N 0.444
L892_g19322 Steinernema scapterisci L892_g19322 N 0.444
L893_g19156 Steinernema glaseri L893_g19156 N 0.444
CJA17191 Caenorhabditis japonica CJA17191 N 0.443
BGLB013626 Biomphalaria glabrata BGLB013626 N 0.441
pbrm-1 Caenorhabditis elegans WBGene00007042 N 0.441
CRE28315 Caenorhabditis remanei CRE28315 N 0.440
TMUE_s0089001400 Trichuris muris TMUE_s0089001400 N 0.437
NV16860 Nasonia vitripennis NV16860 N 0.436
MhA1_Contig1224.frz3.gene1 Meloidogyne hapla MhA1_Contig1224.frz3.gene1 N 0.435
PEQ_0000212901 Parascaris equorum PEQ_0000212901 N 0.435
CBN15844 Caenorhabditis brenneri CBN15844 N 0.434
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N 0.433
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N 0.433
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N 0.433
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N 0.433
67048 Aureococcus anophagefferens 67048 N 0.433
tetur31g01070 Tetranychus urticae tetur31g01070 N 0.433
tetur31g00840 Tetranychus urticae tetur31g00840 N 0.433
66829 Aureococcus anophagefferens 66829 N 0.433
tetur31g00660 Tetranychus urticae tetur31g00660 N 0.433
CBN31697 Caenorhabditis brenneri CBN31697 N 0.432
CBN07735 Caenorhabditis brenneri CBN07735 N 0.432
CRE14258 Caenorhabditis remanei CRE14258 N 0.432
RSKR_0000607700 Rhabditophanes kr3021 RSKR_0000607700 N 0.426
Sakowv30021656m.g Saccoglossus kowalevskii Sakowv30021656m.g N 0.423
EVEC_0001116801 Enterobius vermicularis EVEC_0001116801 N 0.423
DICVIV_02621 Dictyocaulus viviparus DICVIV_02621 N 0.421
tox2 Takifugu rubripes ENSTRUG00000013848 N 0.421
SPU_000793 Strongylocentrotus purpuratus SPU_000793 N 0.421
TRE_0000389001 Trichobilharzia regenti TRE_0000389001 N 0.420
PNEG_03347 Pneumocystis murina PNEG_03347 I 0.420
ASIM_0001613301 Anisakis simplex ASIM_0001613301 N 0.417
ENSOGAG00000011763 Otolemur garnettii ENSOGAG00000011763 N 0.417